Discoglossus pictus

painted frog

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank aDisPic1: GCA_027410445.1 aDisPic1: GCA_027410455.1
ENA aDisPic1: GCA_027410445.1 aDisPic1: GCA_027410455.1
UCSC Genome Browser aDisPic1: GCA_027410445.1 aDisPic1: GCA_027410455.1

metadata.yaml (view) (edit on github)
species:
  short_name: aDisPic
  name: Discoglossus pictus
  taxon_id: 8351
  common_name: painted frog
  order:
    name: Anura
  family:
    name: Alytidae
  individuals:
    - short_name: aDisPic1
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR aDisPic1 494.26 Gbp 127.63x 880.3 GiB
PacBio CLR (.fa) aDisPic1 492.67 Gbp 127.22x 156.7 GiB
10x aDisPic1 256.60 Gbp 66.26x 124.4 GiB
Bionano aDisPic1 N/A 890.41x 5.4 GiB
Arima aDisPic1 250.61 Gbp 64.71x 117.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.87 Gbp.
Last upload on 6 August 2021.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aDisPic1 PacBio CLR 494.26 Gbp 127.63x 880.3 GiB
PacBio CLR (.fa) 492.67 Gbp 127.22x 156.7 GiB
10x 256.60 Gbp 66.26x 124.4 GiB
Bionano N/A 890.41x 5.4 GiB
Arima 250.61 Gbp 64.71x 117.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.87 Gbp.
Last upload on 6 August 2021.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 9 December 2021
aDisPic1.pri.cur.20211209.fasta.gz (1.0 GiB)

Quality: 71.7 errors/Mb (QV=41.44)

Contigs Scaffolds
NG LG Len LG Len
10 23 10.97 Mbp 0 0.57 Gbp
20 65 7.67 Mbp 1 479.18 Mbp
30 126 5.33 Mbp 2 454.65 Mbp
40 206 4.17 Mbp 3 453.72 Mbp
50 312 3.04 Mbp 3 453.72 Mbp
60 457 2.25 Mbp 4 403.84 Mbp
70 660 1.54 Mbp 6 246.79 Mbp
80 976 0.94 Mbp 7 204.09 Mbp
90 1592 395.50 Kbp 11 90.67 Mbp
100 4997 18 bp 1316 202 bp
1.000x 4998 3.81 Gbp 1317 3.87 Gbp
NG based on genome size 3.87 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 9 December 2021
aDisPic1.alt.cur.20211209.fasta.gz (785.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 88 2.42 Mbp 88 2.43 Mbp
20 236 1.59 Mbp 234 1.60 Mbp
30 438 1.21 Mbp 435 1.23 Mbp
40 705 0.93 Mbp 699 0.94 Mbp
50 1049 0.72 Mbp 1038 0.73 Mbp
60 1501 0.54 Mbp 1480 0.55 Mbp
70 2113 386.91 Kbp 2080 395.80 Kbp
80 3004 256.12 Kbp 2951 262.30 Kbp
90 4506 133.98 Kbp 4419 137.72 Kbp
100 8604 329 bp 8421 329 bp
1.000x 8605 2.81 Gbp 8422 2.81 Gbp
NG based on genome size 3.87 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 22 December 2022
aDisPic1.MT.20221222.fasta.gz (5.2 KiB)

Quality: not computed
Assembly Metadata
aDisPic1.yaml (view)
species: Discoglossus_pictus
specimen: aDisPic1
projects:
  - vgp
pri: s3://genomeark/species/Discoglossus_pictus/aDisPic1/assembly_vgp_standard_1.6/aDisPic1.pri.20210803.fasta.gz
alt: s3://genomeark/species/Discoglossus_pictus/aDisPic1/assembly_vgp_standard_1.6/aDisPic1.alt.20210803.fasta.gz
pipeline:
  - falcon_kit (1.8.1)
  - falonc_unzip (1.3.7)
  - purge_dups (1.2.3)
  - scaff10x (4.2)
  - bionano_solve (Solve3.6.1_11162020)
  - salsa (v2.2)
  - gcpp (2.0.2)
  - longranger(2.2.2)
  - freebayes (1.3.2)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.