Echeneis naucrates
live sharksucker
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fEcheNa1: GCA_900963305.2 | fEcheNa1: GCA_900963505.1 |
ENA | fEcheNa1: GCA_900963305.2 | fEcheNa1: GCA_900963505.1 |
UCSC Genome Browser | fEcheNa1: GCA_900963305.2 | fEcheNa1: GCA_900963505.1 |
metadata.yaml (view) (edit on github) |
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CC BY 2.0 Richard ling (wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 0.54 Gbp.
Last upload on 5 February 2019.
Coverage based on genome size 0.54 Gbp.
Last upload on 5 February 2019.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 0.54 Gbp.
Last upload on 5 February 2019.
Coverage based on genome size 0.54 Gbp.
Last upload on 5 February 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.pri.cur.20190401.fasta.gz (147.5 MiB)
Quality: 26.1 errors/Mb (QV=45.83)
Version assembly_curated from 1 April 2019
fEcheNa1.pri.cur.20190401.fasta.gz (147.5 MiB)
Quality: 26.1 errors/Mb (QV=45.83)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 18.72 Mbp | 1 | 26.82 Mbp |
20 | 5 | 17.47 Mbp | 4 | 25.44 Mbp |
30 | 8 | 16.72 Mbp | 6 | 24.88 Mbp |
40 | 12 | 14.27 Mbp | 8 | 24.57 Mbp |
50 | 16 | 12.37 Mbp | 10 | 23.29 Mbp |
60 | 21 | 9.90 Mbp | 13 | 22.31 Mbp |
70 | 27 | 6.88 Mbp | 15 | 20.80 Mbp |
80 | 36 | 4.25 Mbp | 18 | 20.38 Mbp |
90 | 58 | 1.72 Mbp | 20 | 19.09 Mbp |
100 | 176 | 72 bp | 36 | 19.22 Kbp |
1.000x | 177 | 0.54 Gbp | 37 | 0.54 Gbp |
NG based on genome size 0.54 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.alt.cur.20190401.fasta.gz (155.5 MiB)
Quality: not computed
Version assembly_curated from 1 April 2019
fEcheNa1.alt.cur.20190401.fasta.gz (155.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 14 | 2.79 Mbp | 11 | 3.07 Mbp |
20 | 36 | 1.97 Mbp | 32 | 2.05 Mbp |
30 | 66 | 1.58 Mbp | 61 | 1.65 Mbp |
40 | 106 | 1.17 Mbp | 99 | 1.24 Mbp |
50 | 157 | 0.89 Mbp | 148 | 0.92 Mbp |
60 | 229 | 0.62 Mbp | 218 | 0.64 Mbp |
70 | 333 | 422.82 Kbp | 320 | 426.59 Kbp |
80 | 488 | 268.09 Kbp | 475 | 268.09 Kbp |
90 | 750 | 156.29 Kbp | 736 | 156.55 Kbp |
100 | 1423 | 313 bp | 1404 | 313 bp |
1.000x | 1424 | 0.53 Gbp | 1405 | 0.53 Gbp |
NG based on genome size 0.54 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fEcheNa1.MT.20191002.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 2 October 2019
fEcheNa1.MT.20191002.fasta.gz (5.0 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.