Eptesicus chiriquinus

Chiriquinan serotine

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mEptChi
  name: Eptesicus chiriquinus
  taxon_id: 409022
  common_name: Chiriquinan serotine
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mEptChi1
  genome_size: 2383875000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mEptChi1 35.76 Gbp 15.00x 75.0 GiB
PacBio HiFi (.bam) mEptChi1 88.90 Gbp 37.29x 316.4 GiB
Arima mEptChi1 138.07 Gbp 57.92x 56.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.38 Gbp.
Last upload on 13 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mEptChi1 PacBio HiFi (.fq) 35.76 Gbp 15.00x 75.0 GiB
PacBio HiFi (.bam) 88.90 Gbp 37.29x 316.4 GiB
Arima 138.07 Gbp 57.92x 56.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.38 Gbp.
Last upload on 13 December 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 19 December 2023
mEptChi1.HiC.hap1.20231219.fasta.gz (615.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 92.91 Mbp 2 118.91 Mbp
20 6 79.54 Mbp 4 116.01 Mbp
30 9 61.23 Mbp 7 109.16 Mbp
40 13 50.52 Mbp 9 104.87 Mbp
50 18 41.14 Mbp 11 94.95 Mbp
60 25 30.50 Mbp 14 83.80 Mbp
70 35 17.37 Mbp 17 65.45 Mbp
80 65 4.65 Mbp 21 55.42 Mbp
90 250 242.97 Kbp 41 1.03 Mbp
100 0 0
0.907x 443 2.16 Gbp 156 2.16 Gbp
NG based on genome size 2.38 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 19 December 2023
mEptChi1.HiC.hap2.20231219.fasta.gz (569.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 92.84 Mbp 2 118.44 Mbp
20 5 82.15 Mbp 4 115.26 Mbp
30 9 62.54 Mbp 7 109.51 Mbp
40 13 51.94 Mbp 9 102.87 Mbp
50 18 45.55 Mbp 11 94.79 Mbp
60 24 33.94 Mbp 14 79.45 Mbp
70 36 11.53 Mbp 18 58.97 Mbp
80 104 1.39 Mbp 22 38.49 Mbp
90 0 0
100 0 0
0.840x 400 2.00 Gbp 134 2.00 Gbp
NG based on genome size 2.38 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.