Erpetoichthys calabaricus

reedfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fErpCal1: GCA_900747795.4 fErpCal1: GCA_900700845.3
ENA fErpCal1: GCA_900747795.4 fErpCal1: GCA_900700845.3
UCSC Genome Browser fErpCal1: GCA_900747795.4 fErpCal1: GCA_900700845.3

metadata.yaml (view) (edit on github)
species:
  short_name: fErpCal
  name: Erpetoichthys calabaricus
  taxon_id: 27687
  common_name: reedfish
  order:
    name: Polypteriformes
  family:
    name: Polypteridae
  individuals:
    - short_name: fErpCal1
      biosample_id: SAMEA104026374
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 3.0 Michał Zalewski (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fErpCal1 373.84 Gbp 98.10x 673.2 GiB
10x fErpCal1 251.18 Gbp 65.91x 163.1 GiB
Bionano fErpCal1 N/A 309.43x 1.9 GiB
Arima fErpCal1 265.30 Gbp 69.61x 152.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.81 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fErpCal1 PacBio CLR 373.84 Gbp 98.10x 673.2 GiB
10x 251.18 Gbp 65.91x 163.1 GiB
Bionano N/A 309.43x 1.9 GiB
Arima 265.30 Gbp 69.61x 152.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.81 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 5 March 2019
fErpCal1.pri.cur.20190305.fasta.gz (1.0 GiB)

Quality: 47.1 errors/Mb (QV=43.27)

Contigs Scaffolds
NG LG Len LG Len
10 76 3.60 Mbp 1 332.46 Mbp
20 205 2.33 Mbp 2 309.31 Mbp
30 378 1.86 Mbp 3 293.87 Mbp
40 592 1.47 Mbp 5 209.93 Mbp
50 867 1.14 Mbp 6 199.23 Mbp
60 1223 0.88 Mbp 8 195.12 Mbp
70 1697 0.64 Mbp 11 163.43 Mbp
80 2359 439.29 Kbp 13 111.84 Mbp
90 3441 237.02 Kbp 17 88.37 Mbp
100 7497 107 bp 1883 3.04 Kbp
1.000x 7498 3.57 Gbp 1884 3.81 Gbp
NG based on genome size 3.81 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 5 March 2019
fErpCal1.alt.cur.20190305.fasta.gz (764.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 794 256.00 Kbp 794 256.21 Kbp
20 1981 191.42 Kbp 1981 191.48 Kbp
30 3517 152.40 Kbp 3516 152.42 Kbp
40 5430 122.29 Kbp 5429 122.33 Kbp
50 7806 98.42 Kbp 7805 98.43 Kbp
60 10774 78.54 Kbp 10772 78.55 Kbp
70 14498 62.18 Kbp 14496 62.19 Kbp
80 19295 47.38 Kbp 19293 47.38 Kbp
90 25876 32.52 Kbp 25874 32.52 Kbp
100 38597 142 bp 38592 142 bp
1.000x 38598 2.61 Gbp 38593 2.61 Gbp
NG based on genome size 3.81 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fErpCal1.MT.20191002.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.