Falco peregrinus

peregrine falcon

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bFalPer1: GCA_023634155.1 bFalPer1: GCA_023634185.1
ENA bFalPer1: GCA_023634155.1 bFalPer1: GCA_023634185.1
UCSC Genome Browser bFalPer1: GCA_023634155.1 bFalPer1: GCA_023634185.1

metadata.yaml (view) (edit on github)
species:
  short_name: bFalPer
  name: Falco peregrinus
  taxon_id: 8954
  common_name: peregrine falcon
  order:
    name: Falconiformes
  family:
    name: Falconidae
  individuals:
    - short_name: bFalPer1
      provider: Farooq Al-Ajli
      sex: female
      subspecies:
        name: Falco peregrinus calidus
        common_name: Siberian peregrine falcon
        taxon_id: 495983
    - short_name: bFalPer5
      biosample_id: SAMEA115433029
      sex:
  genome_size: 1420000000
  genome_size_method: GoaT ancestral inferred
  project: [ vgp ]
Pixabay License Jasmin777 (Pixabay)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bFalPer1 574.08 Gbp 404.28x 1.0 TiB
PacBio HiFi (.fq, Q≥20) bFalPer1 0.00x 28.6 GiB
PacBio HiFi (.bam) bFalPer5 80.51 Gbp 56.70x 29.4 GiB
Bionano bFalPer1 N/A 287.34x 777.9 MiB
Arima bFalPer1 228.47 Gbp 160.90x 149.1 GiB
bFalPer5 116.01 Gbp 81.70x 31.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 20 July 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bFalPer1 PacBio HiFi (subreads) 574.08 Gbp 404.28x 1.0 TiB
PacBio HiFi (.fq, Q≥20) 0.00x 28.6 GiB
Bionano N/A 287.34x 777.9 MiB
Arima 228.47 Gbp 160.90x 149.1 GiB
bFalPer5 PacBio HiFi (.bam) 80.51 Gbp 56.70x 29.4 GiB
Arima 116.01 Gbp 81.70x 31.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.42 Gbp.
Last upload on 20 July 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 December 2021
bFalPer1.pri.cur.20211214.fasta.gz (362.9 MiB)

Quality: 0.6 errors/Mb (QV=62.04)

Contigs Scaffolds
NG LG Len LG Len
10 3 39.48 Mbp 1 127.34 Mbp
20 7 33.42 Mbp 2 122.91 Mbp
30 11 28.25 Mbp 3 122.59 Mbp
40 17 18.20 Mbp 4 115.61 Mbp
50 26 14.43 Mbp 5 93.68 Mbp
60 38 9.91 Mbp 7 85.81 Mbp
70 55 6.90 Mbp 9 38.95 Mbp
80 90 2.68 Mbp 14 25.94 Mbp
90 193 0.59 Mbp 43 1.71 Mbp
100 0 0
0.921x 356 1.31 Gbp 124 1.31 Gbp
NG based on genome size 1.42 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 December 2021
bFalPer1.alt.cur.20211214.fasta.gz (336.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 3.44 Mbp 31 3.44 Mbp
20 79 2.63 Mbp 79 2.63 Mbp
30 140 2.00 Mbp 140 2.00 Mbp
40 221 1.52 Mbp 221 1.52 Mbp
50 327 1.18 Mbp 327 1.18 Mbp
60 472 0.80 Mbp 472 0.80 Mbp
70 711 441.76 Kbp 711 441.76 Kbp
80 1434 62.59 Kbp 1434 62.59 Kbp
90 0 0
100 0 0
0.828x 2745 1.18 Gbp 2745 1.18 Gbp
NG based on genome size 1.42 Gbp.
Individual 5 Haplotype 1 Assembly
Version assembly_cambridge from 2 October 2024
bFalPer5.hap1.asm.20241002.fasta.gz (357.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 8 14.47 Mbp 2 127.25 Mbp
20 20 10.70 Mbp 3 122.12 Mbp
30 35 8.20 Mbp 4 121.47 Mbp
40 55 6.34 Mbp 5 112.66 Mbp
50 82 4.61 Mbp 7 91.45 Mbp
60 116 3.69 Mbp 8 85.72 Mbp
70 162 2.51 Mbp 11 35.74 Mbp
80 242 1.22 Mbp 15 24.20 Mbp
90 0 0
100 0 0
0.884x 739 1.26 Gbp 392 1.26 Gbp
NG based on genome size 1.42 Gbp.
Individual 5 Haplotype 2 Assembly
Version assembly_cambridge from 2 October 2024
bFalPer5.hap2.asm.20241002.fasta.gz (345.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 13.03 Mbp 2 127.72 Mbp
20 23 9.86 Mbp 3 122.40 Mbp
30 39 7.82 Mbp 4 120.65 Mbp
40 59 6.46 Mbp 5 113.12 Mbp
50 84 4.80 Mbp 7 91.52 Mbp
60 120 3.29 Mbp 8 65.44 Mbp
70 172 2.29 Mbp 12 31.31 Mbp
80 260 1.07 Mbp 28 2.64 Mbp
90 0 0
100 0 0
0.874x 721 1.24 Gbp 387 1.24 Gbp
NG based on genome size 1.42 Gbp.
Individual 5 Mitochondrial Assembly
Version assembly_MT_cambridge from 2 October 2024
bFalPer5.MT.20241002.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.