Gardnerycteris keenani

Keenan's hairy-nosed bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mGarKee
  name: Gardnerycteris keenani
  taxon_id: 2358194
  common_name: Keenan's hairy-nosed bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
    - short_name: mGarKee1
  genome_size: 2141820000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mGarKee1 21.75 Gbp 10.15x 76.7 GiB
PacBio HiFi (.bam) mGarKee1 91.15 Gbp 42.56x 321.4 GiB
Arima mGarKee1 123.97 Gbp 57.88x 67.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.14 Gbp.
Last upload on 13 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mGarKee1 PacBio HiFi (.fq) 21.75 Gbp 10.15x 76.7 GiB
PacBio HiFi (.bam) 91.15 Gbp 42.56x 321.4 GiB
Arima 123.97 Gbp 57.88x 67.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.14 Gbp.
Last upload on 13 December 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 20 December 2023
mGarKee1.HiC.hap1.20231220.fasta.gz (633.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 124.89 Mbp 1 220.40 Mbp
20 4 97.87 Mbp 2 219.49 Mbp
30 6 92.41 Mbp 3 216.60 Mbp
40 9 85.70 Mbp 4 213.44 Mbp
50 12 58.80 Mbp 6 171.19 Mbp
60 16 48.52 Mbp 7 142.41 Mbp
70 20 41.55 Mbp 9 106.78 Mbp
80 26 32.36 Mbp 11 95.64 Mbp
90 35 17.95 Mbp 13 76.78 Mbp
100 65 1.74 Mbp 19 3.02 Mbp
1.029x 421 2.20 Gbp 365 2.20 Gbp
NG based on genome size 2.14 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 20 December 2023
mGarKee1.HiC.hap2.20231220.fasta.gz (596.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 118.12 Mbp 1 221.32 Mbp
20 4 113.93 Mbp 2 219.87 Mbp
30 6 94.94 Mbp 3 216.49 Mbp
40 9 88.67 Mbp 4 213.46 Mbp
50 11 85.10 Mbp 6 171.52 Mbp
60 15 50.39 Mbp 7 142.42 Mbp
70 19 46.59 Mbp 9 106.77 Mbp
80 24 32.76 Mbp 11 94.92 Mbp
90 33 16.34 Mbp 13 75.12 Mbp
100 0 0
0.961x 214 2.06 Gbp 169 2.06 Gbp
NG based on genome size 2.14 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.