Halichoerus grypus

gray seal

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mHalGry
  name: Halichoerus grypus
  taxon_id: 9711
  common_name: gray seal
  order:
    name: Carnivora
  family:
    name: Phocidae
  individuals:
    - short_name: mHalGry1
      biosample_id: SAMEA115427674
      sex: female
  genome_size: 2875320000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mHalGry1 132.42 Gbp 46.05x 48.7 GiB
Arima mHalGry1 404.84 Gbp 140.80x 102.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 11 October 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mHalGry1 PacBio HiFi (.bam) 132.42 Gbp 46.05x 48.7 GiB
Arima 404.84 Gbp 140.80x 102.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 11 October 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 11 December 2024
mHalGry1.hap1.cur.20241211.fasta.gz (692.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 8.39 Mbp 2 209.64 Mbp
20 67 6.38 Mbp 3 208.65 Mbp
30 119 4.89 Mbp 5 187.40 Mbp
40 185 3.97 Mbp 6 179.14 Mbp
50 269 3.02 Mbp 8 152.06 Mbp
60 381 2.22 Mbp 10 139.08 Mbp
70 540 1.45 Mbp 12 111.74 Mbp
80 840 0.56 Mbp 15 94.00 Mbp
90 0 0
100 0 0
0.835x 1301 2.40 Gbp 171 2.40 Gbp
NG based on genome size 2.88 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 11 December 2024
mHalGry1.hap2.cur.20241211.fasta.gz (690.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 8.30 Mbp 2 209.89 Mbp
20 68 6.17 Mbp 3 203.53 Mbp
30 122 4.71 Mbp 5 187.76 Mbp
40 189 3.81 Mbp 6 180.16 Mbp
50 275 2.94 Mbp 8 150.44 Mbp
60 390 2.16 Mbp 10 135.36 Mbp
70 549 1.47 Mbp 12 110.43 Mbp
80 852 0.54 Mbp 15 91.85 Mbp
90 0 0
100 0 0
0.830x 1233 2.39 Gbp 123 2.39 Gbp
NG based on genome size 2.88 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.