Harpagifer antarcticus

Antarctic spiny plunderfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fHarAnt
  name: Harpagifer antarcticus
  taxon_id: 43256
  common_name: Antarctic spiny plunderfish
  order:
    name: Perciformes
  family:
    name: Harpagiferidae
  individuals:
    - short_name: fHarAnt1
      biosample_id: SAMEA9267621
      sex:
  genome_size: 1633260000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fHarAnt1 10.56 Gbp 6.46x 5.6 GiB
Arima fHarAnt1 226.73 Gbp 138.82x 66.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.63 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fHarAnt1 PacBio HiFi (.bam) 10.56 Gbp 6.46x 5.6 GiB
Arima 226.73 Gbp 138.82x 66.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.63 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 16 June 2026
fHarAnt1.hap1.cur.20260616.fasta.gz (279.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 35.94 Mbp 3 52.33 Mbp
20 10 26.32 Mbp 7 48.34 Mbp
30 17 17.49 Mbp 10 46.83 Mbp
40 27 12.85 Mbp 14 41.87 Mbp
50 43 8.43 Mbp 18 34.54 Mbp
60 113 0.98 Mbp 23 25.65 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.654x 1621 1.07 Gbp 1436 1.07 Gbp
NG based on genome size 1.63 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 16 June 2026
fHarAnt1.hap2.cur.20260616.fasta.gz (290.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 33.92 Mbp 3 52.60 Mbp
20 10 29.62 Mbp 7 48.13 Mbp
30 16 23.88 Mbp 10 46.85 Mbp
40 27 11.56 Mbp 14 42.67 Mbp
50 44 7.15 Mbp 18 35.25 Mbp
60 106 1.34 Mbp 24 15.92 Mbp
70 355 360.36 Kbp 222 394.37 Kbp
80 0 0
90 0 0
100 0 0
0.747x 817 1.22 Gbp 653 1.22 Gbp
NG based on genome size 1.63 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.