Hyperolius riggenbachi
Riggenbach's reed frog
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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CC BY 2.5 Václav Gvoždík (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 4.29 Gbp.
Last upload on 29 February 2024.
Coverage based on genome size 4.29 Gbp.
Last upload on 29 February 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
aHypRig1 | PacBio HiFi (.fq) | 184.61 Gbp | 43.06x | 148.3 GiB | |
PacBio HiFi (.bam) | 46.30 Gbp | 10.80x | 189.5 GiB | ||
Arima | 427.46 Gbp | 99.71x | 212.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 4.29 Gbp.
Last upload on 29 February 2024.
Coverage based on genome size 4.29 Gbp.
Last upload on 29 February 2024.
Assemblies
Individual 1 Primary Assembly
No assembly available.
No assembly available.
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | - | - | - | - |
20 | - | - | - | - |
30 | - | - | - | - |
40 | - | - | - | - |
50 | - | - | - | - |
60 | - | - | - | - |
70 | - | - | - | - |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.000x | - | 0.0 Mbp | - | 0.0 Mbp |
Individual 1 Alternate Assembly
Version assembly_vgp_HiC_2.0 from 1 April 2024
aHypRig1.HiC.alt.20240401.fasta.gz (2.2 GiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 1 April 2024
aHypRig1.HiC.alt.20240401.fasta.gz (2.2 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 39 | 7.75 Mbp | 39 | 7.75 Mbp |
20 | 103 | 5.95 Mbp | 103 | 5.95 Mbp |
30 | 185 | 4.72 Mbp | 185 | 4.72 Mbp |
40 | 284 | 4.00 Mbp | 284 | 4.00 Mbp |
50 | 398 | 3.53 Mbp | 398 | 3.53 Mbp |
60 | 526 | 3.17 Mbp | 526 | 3.17 Mbp |
70 | 670 | 2.82 Mbp | 670 | 2.82 Mbp |
80 | 831 | 2.53 Mbp | 831 | 2.53 Mbp |
90 | 1012 | 2.22 Mbp | 1012 | 2.22 Mbp |
100 | 1217 | 1.97 Mbp | 1217 | 1.97 Mbp |
2.237x | 13998 | 9.59 Gbp | 13998 | 9.59 Gbp |
NG based on genome size 4.29 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 1 April 2024
aHypRig1.HiC.hap1.20240401.fasta.gz (1.3 GiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 1 April 2024
aHypRig1.HiC.hap1.20240401.fasta.gz (1.3 GiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 44 | 7.55 Mbp | 1 | 1.47 Gbp |
20 | 109 | 5.83 Mbp | 1 | 1.47 Gbp |
30 | 194 | 4.58 Mbp | 1 | 1.47 Gbp |
40 | 298 | 3.76 Mbp | 2 | 0.56 Gbp |
50 | 423 | 3.16 Mbp | 3 | 449.62 Mbp |
60 | 572 | 2.65 Mbp | 4 | 378.39 Mbp |
70 | 750 | 2.20 Mbp | 5 | 290.32 Mbp |
80 | 965 | 1.80 Mbp | 7 | 246.89 Mbp |
90 | 1229 | 1.46 Mbp | 8 | 204.17 Mbp |
100 | 1574 | 1.04 Mbp | 11 | 157.03 Mbp |
1.174x | 3554 | 5.03 Gbp | 591 | 5.03 Gbp |
NG based on genome size 4.29 Gbp.
Individual 1 Haplotype 2 Assembly
No assembly available.
No assembly available.
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | - | - | - | - |
20 | - | - | - | - |
30 | - | - | - | - |
40 | - | - | - | - |
50 | - | - | - | - |
60 | - | - | - | - |
70 | - | - | - | - |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.000x | - | 0.0 Mbp | - | 0.0 Mbp |
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.