Labrus bergylta

ballan wrasse

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fLabBer
  name: Labrus bergylta
  taxon_id: 56723
  common_name: ballan wrasse
  order:
    name: Perciformes
  family:
    name: Labridae
  individuals:
    - short_name: fLabBer1
      biosample_id: SAMEA111562158
      sex: female
  genome_size: 1408320000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fLabBer1 25.04 Gbp 17.78x 17.4 GiB
Arima fLabBer1 106.78 Gbp 75.82x 31.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.41 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fLabBer1 PacBio HiFi (.bam) 25.04 Gbp 17.78x 17.4 GiB
Arima 106.78 Gbp 75.82x 31.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.41 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 27 January 2024
fLabBer1.pri.cur.20240127.fasta.gz (202.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 5.56 Mbp 4 35.07 Mbp
20 53 3.47 Mbp 8 33.14 Mbp
30 105 2.13 Mbp 13 30.68 Mbp
40 197 1.09 Mbp 18 27.14 Mbp
50 588 87.36 Kbp 24 14.61 Mbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.511x 947 0.72 Gbp 132 0.72 Gbp
NG based on genome size 1.41 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 27 January 2024
fLabBer1.alt.cur.20240127.fasta.gz (196.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 70 1.38 Mbp 70 1.38 Mbp
20 204 0.84 Mbp 204 0.84 Mbp
30 426 495.34 Kbp 426 495.34 Kbp
40 846 215.40 Kbp 846 216.15 Kbp
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.494x 2804 0.70 Gbp 2798 0.70 Gbp
NG based on genome size 1.41 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 August 2023
fLabBer1.MT.20230804.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.