Lagenorhynchus acutus

Atlantic white-sided dolphin

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mLagAcu
  name: Lagenorhynchus acutus
  taxon_id: 90246
  common_name: Atlantic white-sided dolphin
  order:
    name: Cetacea
  family:
    name: Delphinidae
  individuals:
    - short_name: mLagAcu1
      biosample_id: SAMEA114493133
      sex: male
  genome_size: 3080700000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mLagAcu1 143.50 Gbp 46.58x 43.8 GiB
Arima mLagAcu1 461.40 Gbp 149.77x 124.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 10 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mLagAcu1 PacBio HiFi (.bam) 143.50 Gbp 46.58x 43.8 GiB
Arima 461.40 Gbp 149.77x 124.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 10 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 7 July 2024
mLagAcu1.hap1.asm.20240707.fasta.gz (661.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 8.52 Mbp 2 171.60 Mbp
20 71 6.13 Mbp 4 139.90 Mbp
30 129 4.67 Mbp 7 115.76 Mbp
40 203 3.79 Mbp 10 105.82 Mbp
50 295 2.93 Mbp 13 90.37 Mbp
60 419 2.13 Mbp 16 88.97 Mbp
70 593 1.42 Mbp 20 60.06 Mbp
80 896 0.66 Mbp 93 1.10 Mbp
90 0 0
100 0 0
0.871x 2151 2.68 Gbp 1218 2.68 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 7 July 2024
mLagAcu1.hap2.asm.20240707.fasta.gz (615.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 28 8.32 Mbp 2 145.25 Mbp
20 72 5.89 Mbp 5 114.91 Mbp
30 132 4.50 Mbp 8 105.94 Mbp
40 209 3.57 Mbp 11 94.17 Mbp
50 307 2.69 Mbp 14 88.68 Mbp
60 446 1.84 Mbp 18 60.54 Mbp
70 677 0.93 Mbp 24 31.29 Mbp
80 0 0
90 0 0
100 0 0
0.790x 1798 2.43 Gbp 897 2.43 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 7 July 2024
mLagAcu1.MT.20240707.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.