Lampanyctus macdonaldi

rakery beaconlamp

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fLamMac
  name: Lampanyctus macdonaldi
  taxon_id: 521416
  common_name: rakery beaconlamp
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fLamMac1
      biosample_id: SAMEA12815438
      sex:
  genome_size: 1907100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fLamMac1 110.99 Gbp 58.20x 49.3 GiB
Arima fLamMac1 126.67 Gbp 66.42x 39.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 29 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fLamMac1 PacBio HiFi (.bam) 110.99 Gbp 58.20x 49.3 GiB
Arima 126.67 Gbp 66.42x 39.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 29 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 10 June 2024
fLamMac1.hap1.asm.20240610.fasta.gz (419.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 38 3.95 Mbp 2 132.93 Mbp
20 93 3.03 Mbp 4 69.35 Mbp
30 165 2.37 Mbp 7 62.76 Mbp
40 256 1.87 Mbp 10 60.80 Mbp
50 371 1.46 Mbp 13 60.15 Mbp
60 527 1.04 Mbp 16 56.57 Mbp
70 751 0.68 Mbp 20 50.74 Mbp
80 1160 286.01 Kbp 34 1.78 Mbp
90 0 0
100 0 0
0.898x 4814 1.71 Gbp 3134 1.71 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 10 June 2024
fLamMac1.hap2.asm.20240610.fasta.gz (412.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 39 3.87 Mbp 3 68.46 Mbp
20 96 2.90 Mbp 5 68.02 Mbp
30 172 2.28 Mbp 8 65.27 Mbp
40 267 1.77 Mbp 11 61.60 Mbp
50 389 1.37 Mbp 14 60.30 Mbp
60 550 1.02 Mbp 18 56.02 Mbp
70 785 0.64 Mbp 21 49.30 Mbp
80 1258 225.64 Kbp 43 0.99 Mbp
90 0 0
100 0 0
0.875x 4012 1.67 Gbp 2355 1.67 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 June 2024
fLamMac1.MT.20240610.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.