Larus argentatus

Herring Gull

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bLarArg
  name: Larus argentatus
  taxon_id: 35669
  common_name: Herring Gull
  order:
    name: Charadriiformes
  family:
    name: Laridae
  individuals:
    - short_name: bLarArg3
      biosample_id: SAMEA115168456
      sex: female
  genome_size: 1398540000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bLarArg3 238.07 Gbp 170.23x 81.3 GiB
Arima bLarArg3 94.75 Gbp 67.75x 26.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 30 September 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bLarArg3 PacBio HiFi (.bam) 238.07 Gbp 170.23x 81.3 GiB
Arima 94.75 Gbp 67.75x 26.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 30 September 2024.
Assemblies
Individual 3 Haplotype 1 Assembly
Version assembly_curated from 3 December 2024
bLarArg3.hap1.cur.20241203.fasta.gz (379.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 10.19 Mbp 1 220.81 Mbp
20 27 6.86 Mbp 2 170.85 Mbp
30 49 5.63 Mbp 3 130.89 Mbp
40 77 4.66 Mbp 4 99.45 Mbp
50 111 3.56 Mbp 5 88.67 Mbp
60 154 2.96 Mbp 7 74.95 Mbp
70 206 2.39 Mbp 9 58.23 Mbp
80 275 1.73 Mbp 13 23.28 Mbp
90 377 1.03 Mbp 24 7.13 Mbp
100 667 159.70 Kbp 145 229.00 Kbp
1.014x 960 1.42 Gbp 401 1.42 Gbp
NG based on genome size 1.40 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_curated from 3 December 2024
bLarArg3.hap2.cur.20241203.fasta.gz (341.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 12 10.53 Mbp 1 219.75 Mbp
20 29 7.32 Mbp 2 171.87 Mbp
30 50 6.10 Mbp 3 130.19 Mbp
40 75 4.82 Mbp 4 95.93 Mbp
50 108 3.68 Mbp 5 85.94 Mbp
60 149 2.96 Mbp 7 61.03 Mbp
70 206 1.99 Mbp 10 31.80 Mbp
80 299 1.09 Mbp 20 8.52 Mbp
90 0 0
100 0 0
0.899x 989 1.26 Gbp 533 1.26 Gbp
NG based on genome size 1.40 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 13 May 2024
bLarArg3.MT.20240513.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.