Larus occidentalis

Western Gull

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bLarOcc
  name: Larus occidentalis
  taxon_id: 126713
  common_name: Western Gull
  order:
    name: Charadriiformes
  family:
    name: Laridae
  individuals:
    - short_name: bLarOcc1
      biosample_id: SAMEA115348658
      sex: female
  genome_size: 1432770000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bLarOcc1 94.34 Gbp 65.84x 31.5 GiB
Arima bLarOcc1 84.53 Gbp 59.00x 23.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 1 July 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bLarOcc1 PacBio HiFi (.bam) 94.34 Gbp 65.84x 31.5 GiB
Arima 84.53 Gbp 59.00x 23.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 1 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 20 July 2024
bLarOcc1.hap1.asm.20240720.fasta.gz (314.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 12.10 Mbp 1 220.20 Mbp
20 24 8.67 Mbp 2 167.58 Mbp
30 43 6.50 Mbp 3 119.86 Mbp
40 69 4.90 Mbp 4 96.46 Mbp
50 101 3.78 Mbp 6 84.30 Mbp
60 143 3.09 Mbp 8 58.51 Mbp
70 196 2.37 Mbp 10 49.88 Mbp
80 268 1.62 Mbp 16 15.69 Mbp
90 382 0.88 Mbp 58 1.41 Mbp
100 0 0
0.992x 1009 1.42 Gbp 562 1.42 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 20 July 2024
bLarOcc1.hap2.asm.20240720.fasta.gz (294.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 10 11.23 Mbp 1 218.37 Mbp
20 26 6.87 Mbp 2 167.62 Mbp
30 49 5.77 Mbp 3 120.06 Mbp
40 77 4.64 Mbp 4 94.52 Mbp
50 114 3.41 Mbp 6 72.84 Mbp
60 163 2.54 Mbp 8 57.12 Mbp
70 230 1.78 Mbp 13 17.68 Mbp
80 339 0.94 Mbp 34 2.37 Mbp
90 0 0
100 0 0
0.880x 1059 1.26 Gbp 638 1.26 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 July 2024
bLarOcc1.MT.20240720.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.