Lathamus discolor

Swift parrot

Included in the VGP.


metadata.yaml (view) (edit on github)
CC BY-NC-SA 2.0 David Jenkins (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bLatDis1 724.30 Gbp 522.96x 1.2 TiB
PacBio HiFi (.fq) bLatDis1 43.50 Gbp 31.40x 34.6 GiB
PacBio HiFi (.bam) bLatDis1 133.46 Gbp 96.36x 467.1 GiB
Arima bLatDis1 142.75 Gbp 103.07x 71.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.39 Gbp.
Last upload on 26 July 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bLatDis1 PacBio HiFi (subreads) 724.30 Gbp 522.96x 1.2 TiB
PacBio HiFi (.fq) 43.50 Gbp 31.40x 34.6 GiB
PacBio HiFi (.bam) 133.46 Gbp 96.36x 467.1 GiB
Arima 142.75 Gbp 103.07x 71.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.39 Gbp.
Last upload on 26 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 10 July 2023
bLatDis1.hap1.cur.20230710.fasta.gz (315.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 43.45 Mbp 1 166.04 Mbp
20 6 38.47 Mbp 2 160.32 Mbp
30 10 30.90 Mbp 3 152.78 Mbp
40 15 23.64 Mbp 4 128.18 Mbp
50 22 16.32 Mbp 5 126.11 Mbp
60 32 11.93 Mbp 6 112.48 Mbp
70 45 8.73 Mbp 8 41.83 Mbp
80 68 2.97 Mbp 15 13.13 Mbp
90 0 0
100 0 0
0.894x 553 1.24 Gbp 367 1.24 Gbp
NG based on genome size 1.39 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 10 July 2023
bLatDis1.hap2.cur.20230710.fasta.gz (281.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 56.53 Mbp 1 167.12 Mbp
20 5 44.03 Mbp 2 161.57 Mbp
30 9 30.36 Mbp 3 154.80 Mbp
40 14 25.14 Mbp 4 129.02 Mbp
50 20 19.23 Mbp 5 128.19 Mbp
60 30 11.27 Mbp 6 92.27 Mbp
70 48 5.17 Mbp 13 13.09 Mbp
80 330 95.61 Kbp 194 114.33 Kbp
90 0 0
100 0 0
0.809x 535 1.12 Gbp 413 1.12 Gbp
NG based on genome size 1.39 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 10 July 2023
bLatDis1.MT.20230710.fasta.gz (5.7 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/bLatDis1.yml (view)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.