Leuciscus leuciscus

common dace

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fLeuLeu
  name: Leuciscus leuciscus
  taxon_id: 58325
  common_name: common dace
  order:
    name: Cypriniformes
  family:
    name: Cyprinidae
  individuals:
    - short_name: fLeuLeu2
      biosample_id: SAMEA11296544
      sex:
  genome_size: 1207830000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fLeuLeu2 46.70 Gbp 38.66x 29.3 GiB
Arima fLeuLeu2 100.40 Gbp 83.12x 29.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.21 Gbp.
Last upload on 31 January 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fLeuLeu2 PacBio HiFi (.bam) 46.70 Gbp 38.66x 29.3 GiB
Arima 100.40 Gbp 83.12x 29.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.21 Gbp.
Last upload on 31 January 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 21 January 2025
fLeuLeu2.hap1.cur.20250121.fasta.gz (331.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 4.89 Mbp 2 68.78 Mbp
20 50 3.33 Mbp 4 55.66 Mbp
30 91 2.68 Mbp 6 48.29 Mbp
40 143 2.10 Mbp 9 45.20 Mbp
50 208 1.66 Mbp 11 43.73 Mbp
60 292 1.24 Mbp 14 42.41 Mbp
70 404 0.95 Mbp 17 40.01 Mbp
80 555 0.66 Mbp 20 38.02 Mbp
90 813 318.22 Kbp 24 32.94 Mbp
100 0 0
0.992x 2078 1.20 Gbp 876 1.20 Gbp
NG based on genome size 1.21 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 21 January 2025
fLeuLeu2.hap2.cur.20250121.fasta.gz (328.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 23 4.50 Mbp 2 72.07 Mbp
20 54 3.54 Mbp 4 53.77 Mbp
30 92 2.78 Mbp 6 50.15 Mbp
40 140 2.19 Mbp 9 45.64 Mbp
50 201 1.79 Mbp 11 44.63 Mbp
60 280 1.36 Mbp 14 40.28 Mbp
70 382 1.02 Mbp 17 39.55 Mbp
80 529 0.66 Mbp 20 37.60 Mbp
90 783 325.09 Kbp 24 31.52 Mbp
100 0 0
0.976x 1677 1.18 Gbp 530 1.18 Gbp
NG based on genome size 1.21 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 15 March 2024
fLeuLeu2.MT.20240315.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.