Mareca strepera

gadwall

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bMarStr
  name: Mareca strepera
  taxon_id: 75861
  common_name: gadwall
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bMarStr1
      biosample_id: SAMEA112468030
      sex: female
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bMarStr1 33.35 Gbp 24.19x 20.2 GiB
Arima bMarStr1 72.34 Gbp 52.46x 22.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 10 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bMarStr1 PacBio HiFi (.bam) 33.35 Gbp 24.19x 20.2 GiB
Arima 72.34 Gbp 52.46x 22.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 10 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 9 April 2024
bMarStr1.hap1.asm.20240409.fasta.gz (359.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 6.00 Mbp 1 205.76 Mbp
20 46 4.28 Mbp 2 158.88 Mbp
30 82 3.40 Mbp 3 119.04 Mbp
40 129 2.57 Mbp 4 77.40 Mbp
50 192 1.96 Mbp 6 66.26 Mbp
60 269 1.56 Mbp 10 25.98 Mbp
70 377 1.05 Mbp 16 20.23 Mbp
80 549 0.60 Mbp 32 2.63 Mbp
90 994 144.38 Kbp 269 180.11 Kbp
100 0 0
0.938x 2048 1.29 Gbp 1230 1.29 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 9 April 2024
bMarStr1.hap2.asm.20240409.fasta.gz (322.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 6.05 Mbp 1 207.36 Mbp
20 47 3.98 Mbp 2 158.89 Mbp
30 87 3.14 Mbp 3 118.56 Mbp
40 136 2.50 Mbp 4 76.58 Mbp
50 200 1.87 Mbp 7 37.55 Mbp
60 290 1.27 Mbp 12 22.45 Mbp
70 430 0.74 Mbp 20 8.40 Mbp
80 793 159.49 Kbp 154 243.26 Kbp
90 0 0
100 0 0
0.828x 1407 1.14 Gbp 690 1.14 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 9 April 2024
bMarStr1.MT.20240409.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.