Mastacembelus armatus

tire-track eel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fMasArm1: GCA_900324485.3 fMasArm1: GCA_900700395.1
ENA fMasArm1: GCA_900324485.3 fMasArm1: GCA_900700395.1
UCSC Genome Browser fMasArm1: GCA_900324485.3 fMasArm1: GCA_900700395.1

metadata.yaml (view) (edit on github)
species:
  short_name: fMasArm
  name: Mastacembelus armatus
  taxon_id: 205130
  common_name: tire-track eel
  order:
    name: Synbranchiformes
  family:
    name: Mastacembelidae
  individuals:
    - short_name: fMasArm1
      biosample_id: SAMEA104026378
      sex:
  genome_size: 756753344
  genome_size_method:
  project: [ vgp ]
public domain
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fMasArm1 29.91 Gbp 39.52x 53.8 GiB
10x fMasArm1 115.86 Gbp 153.10x 79.4 GiB
Bionano fMasArm1 N/A 2140.44x 2.7 GiB
Arima fMasArm1 148.15 Gbp 195.77x 71.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.76 Gbp.
Last upload on 9 March 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fMasArm1 PacBio CLR 29.91 Gbp 39.52x 53.8 GiB
10x 115.86 Gbp 153.10x 79.4 GiB
Bionano N/A 2140.44x 2.7 GiB
Arima 148.15 Gbp 195.77x 71.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.76 Gbp.
Last upload on 9 March 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 5 March 2019
fMasArm1.pri.cur.20190305.fasta.gz (168.6 MiB)

Quality: 35.7 errors/Mb (QV=44.48)

Contigs Scaffolds
NG LG Len LG Len
10 4 13.57 Mbp 2 28.73 Mbp
20 10 10.96 Mbp 5 27.50 Mbp
30 17 8.70 Mbp 8 25.86 Mbp
40 27 6.69 Mbp 11 24.95 Mbp
50 40 4.76 Mbp 14 23.29 Mbp
60 61 2.31 Mbp 17 21.33 Mbp
70 111 0.90 Mbp 21 19.68 Mbp
80 0 0
90 0 0
100 0 0
0.765x 360 0.58 Gbp 122 0.59 Gbp
NG based on genome size 0.76 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 5 March 2019
fMasArm1.alt.cur.20190305.fasta.gz (12.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 0 0
20 0 0
30 0 0
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.058x 1437 43.70 Mbp 1437 43.70 Mbp
NG based on genome size 0.76 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fMasArm1.MT.20191002.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.