Mergellus albellus

Smew

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bMerAlb
  name: Mergellus albellus
  taxon_id: 107026
  common_name: Smew
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bMerAlb1
      biosample_id: SAMEA112468122
      sex: female
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bMerAlb1 35.02 Gbp 25.39x 20.1 GiB
Arima bMerAlb1 117.28 Gbp 85.05x 36.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 10 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bMerAlb1 PacBio HiFi (.bam) 35.02 Gbp 25.39x 20.1 GiB
Arima 117.28 Gbp 85.05x 36.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 10 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 11 April 2024
bMerAlb1.hap1.asm.20240411.fasta.gz (331.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 6.72 Mbp 1 208.95 Mbp
20 39 4.97 Mbp 2 159.37 Mbp
30 71 3.82 Mbp 3 120.71 Mbp
40 113 2.91 Mbp 4 85.92 Mbp
50 167 2.24 Mbp 6 65.79 Mbp
60 239 1.65 Mbp 9 32.57 Mbp
70 343 1.09 Mbp 15 20.06 Mbp
80 502 0.65 Mbp 28 5.91 Mbp
90 883 186.74 Kbp 254 235.61 Kbp
100 0 0
0.941x 1612 1.30 Gbp 913 1.30 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 11 April 2024
bMerAlb1.hap2.asm.20240411.fasta.gz (300.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 6.39 Mbp 1 206.97 Mbp
20 42 4.81 Mbp 2 159.70 Mbp
30 74 3.85 Mbp 3 120.43 Mbp
40 116 2.78 Mbp 4 72.12 Mbp
50 174 2.10 Mbp 7 37.39 Mbp
60 256 1.37 Mbp 12 22.03 Mbp
70 386 0.80 Mbp 21 9.02 Mbp
80 713 201.49 Kbp 171 262.25 Kbp
90 0 0
100 0 0
0.846x 1580 1.17 Gbp 983 1.17 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 11 April 2024
bMerAlb1.MT.20240411.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.