Micromesistius poutassou

blue whiting

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fMicPou
  name: Micromesistius poutassou
  taxon_id: 81636
  common_name: blue whiting
  order:
    name: Gadiformes
  family:
    name: Gadidae
  individuals:
    - short_name: fMicPou1
      biosample_id: SAMEA111457552
      sex: female
  genome_size: 860640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fMicPou1 17.51 Gbp 20.34x 11.3 GiB
Arima fMicPou1 86.05 Gbp 99.99x 27.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 19 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fMicPou1 PacBio HiFi (.bam) 17.51 Gbp 20.34x 11.3 GiB
Arima 86.05 Gbp 99.99x 27.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.86 Gbp.
Last upload on 19 June 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 2 May 2024
fMicPou1.pri.cur.20240502.fasta.gz (140.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 80 0.71 Mbp 4 23.12 Mbp
20 242 412.19 Kbp 8 21.34 Mbp
30 518 240.88 Kbp 12 19.93 Mbp
40 1007 131.47 Kbp 16 19.02 Mbp
50 2018 53.37 Kbp 22 14.50 Mbp
60 6156 7.80 Kbp 3024 8.28 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.604x 6887 0.52 Gbp 3832 0.52 Gbp
NG based on genome size 0.86 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 2 May 2024
fMicPou1.alt.cur.20240502.fasta.gz (258.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 125 485.15 Kbp 7 11.03 Mbp
20 347 321.02 Kbp 17 6.72 Mbp
30 662 234.66 Kbp 34 3.89 Mbp
40 1082 179.87 Kbp 78 0.90 Mbp
50 1624 141.64 Kbp 255 358.55 Kbp
60 2312 109.89 Kbp 565 220.59 Kbp
70 3207 84.00 Kbp 1047 146.64 Kbp
80 4403 62.24 Kbp 1766 97.87 Kbp
90 6026 45.45 Kbp 2866 62.80 Kbp
100 8297 32.26 Kbp 4640 37.83 Kbp
1.143x 13768 0.98 Gbp 9852 0.98 Gbp
NG based on genome size 0.86 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 28 November 2023
fMicPou1.MT.20231128.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.