Miniopterus schreibersii

Schreibers' long-fingered bat

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMinSch
  name: Miniopterus schreibersii
  taxon_id: 9433
  common_name: Schreibers' long-fingered bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mMinSch1
      biosample_id: SAMEA113980738
      sex: male
  genome_size: 1887540000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMinSch1 63.55 Gbp 33.67x 19.6 GiB
Arima mMinSch1 206.24 Gbp 109.26x 57.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.89 Gbp.
Last upload on 15 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMinSch1 PacBio HiFi (.bam) 63.55 Gbp 33.67x 19.6 GiB
Arima 206.24 Gbp 109.26x 57.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.89 Gbp.
Last upload on 15 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 16 April 2024
mMinSch1.hap1.asm.20240416.fasta.gz (472.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 6.05 Mbp 1 200.21 Mbp
20 62 4.50 Mbp 2 187.45 Mbp
30 110 3.56 Mbp 4 104.29 Mbp
40 169 2.85 Mbp 6 92.79 Mbp
50 244 2.28 Mbp 8 86.28 Mbp
60 338 1.80 Mbp 11 83.00 Mbp
70 455 1.40 Mbp 13 73.06 Mbp
80 616 0.96 Mbp 16 53.96 Mbp
90 867 0.54 Mbp 20 40.25 Mbp
100 0 0
0.977x 1713 1.85 Gbp 487 1.85 Gbp
NG based on genome size 1.89 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 16 April 2024
mMinSch1.hap2.asm.20240416.fasta.gz (441.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 6.29 Mbp 1 199.56 Mbp
20 61 4.49 Mbp 2 186.32 Mbp
30 111 3.38 Mbp 4 96.44 Mbp
40 173 2.70 Mbp 6 91.54 Mbp
50 252 2.13 Mbp 9 82.94 Mbp
60 352 1.69 Mbp 11 73.82 Mbp
70 482 1.22 Mbp 14 55.20 Mbp
80 677 0.77 Mbp 17 44.67 Mbp
90 1209 84.48 Kbp 105 122.00 Kbp
100 0 0
0.904x 1355 1.71 Gbp 233 1.71 Gbp
NG based on genome size 1.89 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 16 April 2024
mMinSch1.MT.20240416.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.