Muntiacus reevesi

Reeves' muntjac

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mMunRee1: GCA_963930625.1 mMunRee1: GCA_963930625.2 mMunRee1: GCA_963930665.2
ENA mMunRee1: GCA_963930625.1 mMunRee1: GCA_963930625.2 mMunRee1: GCA_963930665.2
UCSC Genome Browser mMunRee1: GCA_963930625.1 mMunRee1: GCA_963930625.2 mMunRee1: GCA_963930665.2

metadata.yaml (view) (edit on github)
species:
  short_name: mMunRee
  name: Muntiacus reevesi
  taxon_id: 9886
  common_name: Reeves' muntjac
  order:
    name: Artiodactyla
  family:
    name: Cervidae
  individuals:
    - short_name: mMunRee1
      biosample_id: SAMEA110690972
      sex: female
    - short_name: mMunRee2
      biosample_id: SAMEA110690973
      sex: male
  genome_size: 2924220000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMunRee1 123.96 Gbp 42.39x 61.0 GiB
Arima mMunRee2 303.22 Gbp 103.69x 90.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.92 Gbp.
Last upload on 15 December 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMunRee1 PacBio HiFi (.bam) 123.96 Gbp 42.39x 61.0 GiB
mMunRee2 Arima 303.22 Gbp 103.69x 90.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.92 Gbp.
Last upload on 15 December 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 January 2026
mMunRee1.pri.cur.20260115.fasta.gz (774.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 195.12 Mbp 2 281.26 Mbp
20 3 132.68 Mbp 3 271.11 Mbp
30 6 106.50 Mbp 4 171.73 Mbp
40 9 77.97 Mbp 6 125.71 Mbp
50 13 72.35 Mbp 8 97.73 Mbp
60 18 62.44 Mbp 11 86.03 Mbp
70 23 49.32 Mbp 15 70.60 Mbp
80 29 32.81 Mbp 19 62.44 Mbp
90 69 1.66 Mbp 36 2.22 Mbp
100 0 0
0.921x 279 2.69 Gbp 242 2.69 Gbp
NG based on genome size 2.92 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 January 2026
mMunRee1.alt.cur.20260115.fasta.gz (787.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 46 4.67 Mbp 2 232.55 Mbp
20 121 3.31 Mbp 3 220.81 Mbp
30 225 2.44 Mbp 5 115.62 Mbp
40 360 1.88 Mbp 8 84.09 Mbp
50 536 1.49 Mbp 11 73.80 Mbp
60 762 1.12 Mbp 16 59.64 Mbp
70 1073 0.78 Mbp 21 46.57 Mbp
80 1545 476.75 Kbp 65 1.81 Mbp
90 2837 95.15 Kbp 934 95.24 Kbp
100 0 0
0.965x 8017 2.82 Gbp 6117 2.82 Gbp
NG based on genome size 2.92 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 19 December 2023
mMunRee1.MT.20231219.fasta.gz (5.2 KiB)

Quality: not computed
Individual 3 Primary Assembly
Version assembly_curated from 6 July 2026
mMunRee3.pri.cur.20260706.fasta.gz (829.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 287.23 Mbp 2 287.23 Mbp
20 3 272.55 Mbp 3 272.55 Mbp
30 4 188.44 Mbp 4 188.44 Mbp
40 5 169.88 Mbp 5 169.88 Mbp
50 7 130.46 Mbp 7 130.46 Mbp
60 10 108.53 Mbp 10 108.53 Mbp
70 13 94.72 Mbp 13 94.72 Mbp
80 16 79.80 Mbp 16 79.80 Mbp
90 20 72.14 Mbp 20 72.14 Mbp
100 0 0
0.992x 25 2.90 Gbp 25 2.90 Gbp
NG based on genome size 2.92 Gbp.
Individual 3 Alternate Assembly
No assembly available.


Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
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40 - - - -
50 - - - -
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90 - - - -
100 - - - -
0.000x - 0.0 Mbp - 0.0 Mbp
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.