Muscardinus avellanarius

hazel dormouse

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMusAve
  name: Muscardinus avellanarius
  taxon_id: 39082
  common_name: hazel dormouse
  order:
    name: Rodentia
  family:
    name: Gliridae
  individuals:
    - short_name: mMusAve1
      biosample_id: SAMEA110180654
      sex: female
  genome_size: 3882659999.5
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMusAve1 142.78 Gbp 36.77x 123.6 GiB
Arima mMusAve1 542.86 Gbp 139.82x 157.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.88 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMusAve1 PacBio HiFi (.bam) 142.78 Gbp 36.77x 123.6 GiB
Arima 542.86 Gbp 139.82x 157.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.88 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 22 August 2023
mMusAve1.pri.cur.20230822.fasta.gz (712.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 55 5.24 Mbp 2 203.09 Mbp
20 147 3.48 Mbp 5 142.52 Mbp
30 277 2.61 Mbp 7 131.30 Mbp
40 451 1.90 Mbp 11 113.83 Mbp
50 699 1.26 Mbp 14 99.45 Mbp
60 1143 0.55 Mbp 19 53.12 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.643x 2018 2.50 Gbp 213 2.50 Gbp
NG based on genome size 3.88 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 22 August 2023
mMusAve1.alt.cur.20230822.fasta.gz (339.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4521 54.89 Kbp 4521 54.89 Kbp
20 14089 31.53 Kbp 14089 31.53 Kbp
30 30121 15.75 Kbp 30121 15.75 Kbp
40 0 0
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.306x 31856 1.19 Gbp 31856 1.19 Gbp
NG based on genome size 3.88 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 August 2023
mMusAve1.MT.20230804.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.