Myotis myotis

Greater mouse-eared bat

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mMyoMyo1: GCA_014108235.1
ENA mMyoMyo1: GCA_014108235.1
UCSC Genome Browser mMyoMyo1: GCA_014108235.1

metadata.yaml (view) (edit on github)
species:
  short_name: mMyoMyo
  name: Myotis myotis
  taxon_id: 51298
  common_name: Greater mouse-eared bat
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mMyoMyo1
    - short_name: mMyoMyo2
      biosample_id: SAMEA114088889
      sex: male
  genome_size:
  genome_size_method:
  project: [ bat1k, vgp ]
CC BY-SA 4.0 MissMhisi (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mMyoMyo1 182.21 Gbp 90.96x 322.4 GiB
PacBio HiFi (.bam) mMyoMyo2 121.88 Gbp 60.84x 41.9 GiB
10x mMyoMyo1 96.00 Gbp 47.92x 58.5 GiB
Bionano mMyoMyo1 N/A 978.33x 3.0 GiB
Arima mMyoMyo2 1186.27 Gbp 592.18x 331.8 GiB
Phase mMyoMyo1 28.51 Gbp 14.23x 15.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.00 Gbp.
Last upload on 22 October 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMyoMyo1 PacBio CLR 182.21 Gbp 90.96x 322.4 GiB
10x 96.00 Gbp 47.92x 58.5 GiB
Bionano N/A 978.33x 3.0 GiB
Phase 28.51 Gbp 14.23x 15.9 GiB
mMyoMyo2 PacBio HiFi (.bam) 121.88 Gbp 60.84x 41.9 GiB
Arima 1186.27 Gbp 592.18x 331.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.00 Gbp.
Last upload on 22 October 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_dresden_DAmar1.0 from 16 April 2019
mMyoMyo1.pri.asm.20190416.fasta.gz (630.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 39.55 Mbp 0 223.37 Mbp
20 10 30.73 Mbp 1 217.76 Mbp
30 17 23.87 Mbp 2 213.72 Mbp
40 27 18.23 Mbp 4 111.27 Mbp
50 40 12.51 Mbp 6 94.45 Mbp
60 58 9.53 Mbp 8 92.78 Mbp
70 83 5.65 Mbp 10 78.48 Mbp
80 128 3.44 Mbp 13 55.60 Mbp
90 210 1.57 Mbp 17 43.54 Mbp
100 629 3.54 Kbp 91 15.96 Kbp
1.000x 630 1.97 Gbp 92 2.00 Gbp
NG based on genome size 2.00 Gbp.
Individual 1 Alternate Assembly
No assembly available.


Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.000x - 0.0 Mbp - 0.0 Mbp
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 December 2019
mMyoMyo1.MT.20191205.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.