Myxine glutinosa

Atlantic hagfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: kmMyxGlut
  name: Myxine glutinosa
  taxon_id: 7769
  common_name: Atlantic hagfish
  order:
    name: Myxiniformes
  family:
    name: Myxinidae
  individuals:
    - short_name: kmMyxGlut1
      biosample_id: SAMEA12790223
      sex:
  genome_size: 4195620000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kmMyxGlut1 163.33 Gbp 38.93x 96.1 GiB
Arima kmMyxGlut1 1738.48 Gbp 414.35x 552.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.20 Gbp.
Last upload on 7 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kmMyxGlut1 PacBio HiFi (.bam) 163.33 Gbp 38.93x 96.1 GiB
Arima 1738.48 Gbp 414.35x 552.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 4.20 Gbp.
Last upload on 7 November 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 June 2024
kmMyxGlut1.pri.cur.20240615.fasta.gz (746.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 200 1.61 Mbp 1 448.54 Mbp
20 510 1.16 Mbp 3 220.90 Mbp
30 925 0.89 Mbp 5 212.07 Mbp
40 1471 0.66 Mbp 7 191.53 Mbp
50 2238 457.39 Kbp 10 138.58 Mbp
60 3430 265.59 Kbp 13 106.09 Mbp
70 6025 91.00 Kbp 1604 91.29 Kbp
80 0 0
90 0 0
100 0 0
0.729x 8416 3.06 Gbp 4004 3.06 Gbp
NG based on genome size 4.20 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 June 2024
kmMyxGlut1.alt.cur.20240615.fasta.gz (699.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 708 420.37 Kbp 708 420.37 Kbp
20 1937 287.90 Kbp 1937 287.90 Kbp
30 3669 205.28 Kbp 3669 205.28 Kbp
40 6082 147.47 Kbp 6082 147.55 Kbp
50 9623 94.58 Kbp 9621 94.58 Kbp
60 15907 44.37 Kbp 15905 44.37 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.656x 24878 2.75 Gbp 24876 2.75 Gbp
NG based on genome size 4.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 14 November 2023
kmMyxGlut1.MT.20231114.fasta.gz (5.8 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.