Natrix helvetica

Barred grass snake

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rNatHel
  name: Natrix helvetica
  taxon_id: 2025560
  common_name: Barred grass snake
  order:
    name: Squamata
  family:
    name: Natricidae
  individuals:
    - short_name: rNatHel1
      biosample_id: SAMEA114598156
      sex: female
  genome_size: 2298300000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rNatHel1 66.33 Gbp 28.86x 20.5 GiB
Arima rNatHel1 429.27 Gbp 186.78x 122.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.30 Gbp.
Last upload on 8 August 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rNatHel1 PacBio HiFi (.bam) 66.33 Gbp 28.86x 20.5 GiB
Arima 429.27 Gbp 186.78x 122.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.30 Gbp.
Last upload on 8 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 2 October 2024
rNatHel1.hap1.cur.20241002.fasta.gz (503.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 36 4.99 Mbp 1 376.82 Mbp
20 94 3.37 Mbp 2 298.88 Mbp
30 174 2.48 Mbp 3 178.64 Mbp
40 283 1.77 Mbp 4 172.83 Mbp
50 437 1.25 Mbp 5 154.33 Mbp
60 668 0.77 Mbp 7 86.73 Mbp
70 1097 364.11 Kbp 11 28.48 Mbp
80 0 0
90 0 0
100 0 0
0.773x 2497 1.78 Gbp 487 1.78 Gbp
NG based on genome size 2.30 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 2 October 2024
rNatHel1.hap2.cur.20241002.fasta.gz (434.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 39 4.47 Mbp 1 374.00 Mbp
20 102 3.11 Mbp 2 293.62 Mbp
30 190 2.31 Mbp 3 174.92 Mbp
40 316 1.48 Mbp 4 170.63 Mbp
50 517 0.89 Mbp 5 140.97 Mbp
60 934 337.93 Kbp 10 23.18 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.658x 2176 1.51 Gbp 502 1.51 Gbp
NG based on genome size 2.30 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.