Neovison vison

American mink

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mNeoVis
  name: Neovison vison
  taxon_id: 452646
  common_name: American mink
  order:
    name: Carnivora
  family:
    name: Mustelidae
  individuals:
    - short_name: mNeoVis2
      biosample_id: SAMEA112468126
      sex: female
  genome_size: 2880210000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mNeoVis2 134.33 Gbp 46.64x 55.0 GiB
Arima mNeoVis2 780.46 Gbp 270.97x 214.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 25 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mNeoVis2 PacBio HiFi (.bam) 134.33 Gbp 46.64x 55.0 GiB
Arima 780.46 Gbp 270.97x 214.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.88 Gbp.
Last upload on 25 April 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 30 May 2024
mNeoVis2.hap1.cur.20240530.fasta.gz (766.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 64 3.48 Mbp 1 325.66 Mbp
20 160 2.66 Mbp 3 240.71 Mbp
30 285 2.08 Mbp 4 237.42 Mbp
40 441 1.64 Mbp 5 224.20 Mbp
50 634 1.36 Mbp 6 221.12 Mbp
60 873 1.07 Mbp 8 164.45 Mbp
70 1183 0.80 Mbp 10 149.39 Mbp
80 1616 0.55 Mbp 11 146.76 Mbp
90 2363 240.86 Kbp 14 72.69 Mbp
100 0 0
0.936x 3392 2.70 Gbp 435 2.70 Gbp
NG based on genome size 2.88 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 30 May 2024
mNeoVis2.hap2.cur.20240530.fasta.gz (760.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 66 3.39 Mbp 1 314.01 Mbp
20 164 2.59 Mbp 3 239.06 Mbp
30 290 2.06 Mbp 4 229.49 Mbp
40 449 1.63 Mbp 5 219.87 Mbp
50 643 1.36 Mbp 6 217.71 Mbp
60 881 1.07 Mbp 8 167.90 Mbp
70 1191 0.80 Mbp 10 146.58 Mbp
80 1624 0.54 Mbp 12 130.26 Mbp
90 2428 196.42 Kbp 15 46.71 Mbp
100 0 0
0.924x 3200 2.66 Gbp 351 2.66 Gbp
NG based on genome size 2.88 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 20 March 2024
mNeoVis2.MT.20240320.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.