Notolabrus celidotus

spotty wrasse

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fNotCel1: GCA_009762535.1 fNotCel1: GCA_009762545.1
ENA fNotCel1: GCA_009762535.1 fNotCel1: GCA_009762545.1
UCSC Genome Browser fNotCel1: GCA_009762535.1 fNotCel1: GCA_009762545.1

metadata.yaml (view) (edit on github)
species:
  common_name: spotty wrasse
  family:
    name: Labridae
  genome_size: 1000000000
  genome_size_method: null
  individuals:
  - short_name: fNotCel1
  name: Notolabrus celidotus
  order:
    name: Perciformes
  short_name: fNotCel
  taxon_id: 1203425
  project: [ vgp ]
Apple
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fNotCel1 71.01 Gbp 71.01x 123.7 GiB
10x fNotCel1 52.53 Gbp 52.53x 26.9 GiB
Bionano fNotCel1 N/A 1310.13x 2.4 GiB
Arima fNotCel1 228.72 Gbp 228.72x 117.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 3 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fNotCel1 PacBio CLR 71.01 Gbp 71.01x 123.7 GiB
10x 52.53 Gbp 52.53x 26.9 GiB
Bionano N/A 1310.13x 2.4 GiB
Arima 228.72 Gbp 228.72x 117.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 3 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 November 2019
fNotCel1.pri.cur.20191108.fasta.gz (239.6 MiB)

Quality: 174.1 errors/Mb (QV=37.59)

Contigs Scaffolds
NG LG Len LG Len
10 8 9.12 Mbp 2 40.77 Mbp
20 20 6.85 Mbp 4 39.65 Mbp
30 37 5.48 Mbp 7 38.34 Mbp
40 59 4.04 Mbp 10 37.09 Mbp
50 89 2.53 Mbp 12 35.66 Mbp
60 138 1.63 Mbp 15 32.41 Mbp
70 230 0.72 Mbp 19 29.53 Mbp
80 632 95.27 Kbp 22 26.92 Mbp
90 0 0
100 0 0
0.832x 1603 0.83 Gbp 468 0.85 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 8 November 2019
fNotCel1.alt.cur.20191108.fasta.gz (224.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 49 1.58 Mbp 49 1.58 Mbp
20 128 1.07 Mbp 128 1.07 Mbp
30 238 0.77 Mbp 238 0.77 Mbp
40 395 0.55 Mbp 395 0.55 Mbp
50 612 381.59 Kbp 612 381.59 Kbp
60 947 231.38 Kbp 947 231.38 Kbp
70 1604 96.40 Kbp 1604 96.40 Kbp
80 0 0
90 0 0
100 0 0
0.771x 3286 0.77 Gbp 3286 0.77 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller_nanopore from 14 December 2019
fNotCel1.MT.20191214.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.