Otis tarda

great bustard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bOtiTar
  name: Otis tarda
  taxon_id: 73107
  common_name: great bustard
  order:
    name: Otidiformes
  family:
    name: Otididae
  individuals:
    - short_name: bOtiTar7
      biosample_id: SAMEA114806514
      sex: female
  genome_size: 1388760000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bOtiTar3 13.50 Gbp 9.72x 7.2 GiB
bOtiTar7 66.59 Gbp 47.95x 20.9 GiB
Arima bOtiTar7 82.60 Gbp 59.48x 23.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.39 Gbp.
Last upload on 10 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bOtiTar3 PacBio HiFi (.bam) 13.50 Gbp 9.72x 7.2 GiB
bOtiTar7 PacBio HiFi (.bam) 66.59 Gbp 47.95x 20.9 GiB
Arima 82.60 Gbp 59.48x 23.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.39 Gbp.
Last upload on 10 April 2024.
Assemblies
Individual 7 Haplotype 1 Assembly
Version assembly_cambridge from 10 April 2024
bOtiTar7.hap1.asm.20240410.fasta.gz (298.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 8.79 Mbp 1 217.11 Mbp
20 30 6.91 Mbp 2 163.33 Mbp
30 53 5.65 Mbp 3 126.07 Mbp
40 80 4.71 Mbp 4 83.25 Mbp
50 114 3.59 Mbp 6 44.73 Mbp
60 161 2.49 Mbp 10 24.31 Mbp
70 230 1.59 Mbp 17 16.16 Mbp
80 381 400.10 Kbp 52 0.86 Mbp
90 0 0
100 0 0
0.836x 1073 1.16 Gbp 694 1.16 Gbp
NG based on genome size 1.39 Gbp.
Individual 7 Haplotype 2 Assembly
Version assembly_cambridge from 10 April 2024
bOtiTar7.hap2.asm.20240410.fasta.gz (328.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 9.05 Mbp 1 218.45 Mbp
20 30 6.95 Mbp 2 163.90 Mbp
30 53 5.77 Mbp 3 125.98 Mbp
40 79 4.89 Mbp 4 82.66 Mbp
50 110 3.86 Mbp 6 72.13 Mbp
60 151 3.08 Mbp 9 33.69 Mbp
70 206 2.11 Mbp 14 23.49 Mbp
80 289 1.30 Mbp 22 11.89 Mbp
90 486 275.64 Kbp 106 353.91 Kbp
100 0 0
0.934x 1045 1.30 Gbp 620 1.30 Gbp
NG based on genome size 1.39 Gbp.
Individual 7 Mitochondrial Assembly
Version assembly_MT_cambridge from 10 April 2024
bOtiTar7.MT.20240410.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.