Pipistrellus kuhlii

Kuhl's pipistrelle

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mPipKuh1: GCA_014108245.1
ENA mPipKuh1: GCA_014108245.1
UCSC Genome Browser mPipKuh1: GCA_014108245.1

metadata.yaml (view) (edit on github)
species:
  short_name: mPipKuh
  name: Pipistrellus kuhlii
  taxon_id: 59472
  common_name: Kuhl's pipistrelle
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mPipKuh1
  genome_size: 1775719727
  genome_size_method: DAmar assembly 
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mPipKuh1 144.60 Gbp 81.43x 253.3 GiB
10x mPipKuh1 95.71 Gbp 53.90x 59.3 GiB
Bionano mPipKuh1 N/A 798.92x 2.1 GiB
Phase mPipKuh1 30.93 Gbp 17.42x 17.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.78 Gbp.
Last upload on 27 November 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPipKuh1 PacBio CLR 144.60 Gbp 81.43x 253.3 GiB
10x 95.71 Gbp 53.90x 59.3 GiB
Bionano N/A 798.92x 2.1 GiB
Phase 30.93 Gbp 17.42x 17.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.78 Gbp.
Last upload on 27 November 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_dresden_DAmar1.0 from 24 April 2019
mPipKuh1.pri.asm.20190424.fasta.gz (562.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 34.46 Mbp 0 197.21 Mbp
20 9 28.49 Mbp 1 189.23 Mbp
30 18 18.93 Mbp 2 187.11 Mbp
40 28 14.71 Mbp 4 83.51 Mbp
50 43 10.24 Mbp 6 80.24 Mbp
60 61 8.52 Mbp 9 57.45 Mbp
70 88 5.20 Mbp 12 51.07 Mbp
80 132 3.14 Mbp 16 30.60 Mbp
90 219 1.25 Mbp 30 6.78 Mbp
100 0 201 19.24 Kbp
0.993x 596 1.76 Gbp 202 1.78 Gbp
NG based on genome size 1.78 Gbp.
Individual 1 Alternate Assembly
No assembly available.


Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.000x - 0.0 Mbp - 0.0 Mbp
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
mPipKuh1.MT.20191204.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.