Platichthys flesus

European flounder

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fPlaFle2: GCA_949316205.1 fPlaFle2: GCA_949316195.1
ENA fPlaFle2: GCA_949316205.1 fPlaFle2: GCA_949316195.1
UCSC Genome Browser fPlaFle2: GCA_949316205.1 fPlaFle2: GCA_949316195.1

metadata.yaml (view) (edit on github)
species:
  short_name: fPlaFle
  name: Platichthys flesus
  taxon_id: 8260
  common_name: European flounder
  order:
    name: Pleuronectiformes
  family:
    name: Pleuronectidae
  individuals:
    - short_name: fPlaFle2
      biosample_id: SAMEA110026475
      sex:
  genome_size: 645480000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fPlaFle2 27.55 Gbp 42.68x 96.2 GiB
Arima fPlaFle2 88.99 Gbp 137.87x 27.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.65 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPlaFle2 PacBio HiFi (.bam) 27.55 Gbp 42.68x 96.2 GiB
Arima 88.99 Gbp 137.87x 27.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.65 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 16 August 2023
fPlaFle2.pri.cur.20230816.fasta.gz (170.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 8 5.98 Mbp 3 28.89 Mbp
20 20 4.73 Mbp 5 28.54 Mbp
30 39 3.03 Mbp 7 28.16 Mbp
40 62 2.47 Mbp 9 27.30 Mbp
50 92 1.95 Mbp 12 25.46 Mbp
60 130 1.48 Mbp 14 24.71 Mbp
70 180 1.16 Mbp 17 21.87 Mbp
80 252 0.69 Mbp 20 21.10 Mbp
90 405 216.28 Kbp 24 15.67 Mbp
100 0 0
0.925x 591 0.60 Gbp 109 0.60 Gbp
NG based on genome size 0.65 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 16 August 2023
fPlaFle2.alt.cur.20230816.fasta.gz (168.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 2.28 Mbp 20 2.28 Mbp
20 54 1.62 Mbp 54 1.62 Mbp
30 101 1.22 Mbp 101 1.22 Mbp
40 164 0.88 Mbp 164 0.88 Mbp
50 250 0.64 Mbp 250 0.64 Mbp
60 366 480.25 Kbp 366 480.25 Kbp
70 529 330.16 Kbp 529 330.16 Kbp
80 789 178.11 Kbp 789 178.11 Kbp
90 1585 28.71 Kbp 1585 28.71 Kbp
100 0 0
0.911x 1915 0.59 Gbp 1915 0.59 Gbp
NG based on genome size 0.65 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 9 February 2023
fPlaFle2.MT.20230209.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.