Pleuronectes platessa

European plaice

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fPlePla1: GCA_947347685.1 fPlePla1: GCA_947347695.1
ENA fPlePla1: GCA_947347685.1 fPlePla1: GCA_947347695.1
UCSC Genome Browser fPlePla1: GCA_947347685.1 fPlePla1: GCA_947347695.1

metadata.yaml (view) (edit on github)
species:
  short_name: fPlePla
  name: Pleuronectes platessa
  taxon_id: 8262
  common_name: European plaice
  order:
    name: Pleuronectiformes
  family:
    name: Pleuronectidae
  individuals:
    - short_name: fPlePla1
      biosample_id: SAMEA13853390
      sex:
  genome_size: 381420000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fPlePla1 21.86 Gbp 57.32x 15.2 GiB
Arima fPlePla1 134.67 Gbp 353.08x 40.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 381.42 Mbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPlePla1 PacBio HiFi (.bam) 21.86 Gbp 57.32x 15.2 GiB
Arima 134.67 Gbp 353.08x 40.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 381.42 Mbp.
Last upload on 9 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 March 2023
fPlePla1.pri.cur.20230308.fasta.gz (183.2 MiB)

Quality: 2.4 errors/Mb (QV=56.19)

Contigs Scaffolds
NG LG Len LG Len
10 5 5.87 Mbp 1 32.75 Mbp
20 12 5.22 Mbp 2 31.71 Mbp
30 20 4.21 Mbp 3 31.25 Mbp
40 30 3.44 Mbp 4 30.71 Mbp
50 43 2.94 Mbp 6 30.02 Mbp
60 57 2.54 Mbp 7 29.49 Mbp
70 73 2.10 Mbp 8 28.27 Mbp
80 93 1.73 Mbp 9 27.62 Mbp
90 117 1.48 Mbp 11 26.65 Mbp
100 144 1.31 Mbp 12 26.54 Mbp
1.802x 1428 0.69 Gbp 356 0.69 Gbp
NG based on genome size 381.42 Mbp.
Individual 1 Alternate Assembly
Version assembly_curated from 8 March 2023
fPlePla1.alt.cur.20230308.fasta.gz (172.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 13 2.23 Mbp 13 2.23 Mbp
20 36 1.43 Mbp 36 1.43 Mbp
30 65 1.18 Mbp 65 1.18 Mbp
40 102 0.92 Mbp 102 0.92 Mbp
50 147 0.78 Mbp 147 0.78 Mbp
60 200 0.67 Mbp 200 0.67 Mbp
70 262 0.56 Mbp 262 0.56 Mbp
80 334 472.31 Kbp 334 472.31 Kbp
90 423 391.44 Kbp 423 391.44 Kbp
100 532 317.74 Kbp 532 317.74 Kbp
1.608x 3222 0.61 Gbp 3219 0.61 Gbp
NG based on genome size 381.42 Mbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.