Podarcis gaigeae

Skyros wall lizard

Included in the VGP.


metadata.yaml (view) (edit on github)
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodGai1 64.26 Gbp 33.25x 24.0 GiB
Arima rPodGai1 191.45 Gbp 99.05x 54.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 19 February 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodGai1 PacBio HiFi (.bam) 64.26 Gbp 33.25x 24.0 GiB
Arima 191.45 Gbp 99.05x 54.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 19 February 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 13 September 2024
rPodGai1.hap1.cur.20240913.fasta.gz (434.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 6.30 Mbp 2 127.28 Mbp
20 61 4.66 Mbp 3 122.63 Mbp
30 109 3.53 Mbp 5 101.56 Mbp
40 171 2.81 Mbp 7 91.93 Mbp
50 249 2.12 Mbp 10 75.82 Mbp
60 355 1.56 Mbp 12 62.69 Mbp
70 518 0.89 Mbp 16 46.85 Mbp
80 0 0
90 0 0
100 0 0
0.784x 1094 1.51 Gbp 211 1.51 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 13 September 2024
rPodGai1.hap2.cur.20240913.fasta.gz (409.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 6.91 Mbp 2 124.56 Mbp
20 58 4.75 Mbp 4 106.82 Mbp
30 105 3.61 Mbp 5 101.64 Mbp
40 166 2.67 Mbp 7 91.28 Mbp
50 248 2.06 Mbp 10 76.20 Mbp
60 359 1.41 Mbp 12 63.81 Mbp
70 560 0.59 Mbp 16 43.20 Mbp
80 0 0
90 0 0
100 0 0
0.736x 910 1.42 Gbp 127 1.42 Gbp
NG based on genome size 1.93 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 February 2024
rPodGai1.MT.20240227.fasta.gz (5.7 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.