Podarcis tiliguerta

Tyrrhenian wall lizard

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rPodTil
  name: Podarcis tiliguerta
  taxon_id: 65485
  common_name: Tyrrhenian wall lizard
  order:
    name: Squamata
  family:
    name: Lacertidae
  individuals:
    - short_name: rPodTil1
      biosample_id: SAMEA114217799
      sex: female
  genome_size: 2200500000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rPodTil1 51.75 Gbp 23.52x 14.5 GiB
Arima rPodTil1 221.46 Gbp 100.64x 61.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.20 Gbp.
Last upload on 8 June 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rPodTil1 PacBio HiFi (.bam) 51.75 Gbp 23.52x 14.5 GiB
Arima 221.46 Gbp 100.64x 61.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.20 Gbp.
Last upload on 8 June 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 11 June 2024
rPodTil1.hap1.asm.20240611.fasta.gz (379.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 31 5.33 Mbp 2 121.09 Mbp
20 80 3.76 Mbp 4 103.33 Mbp
30 147 2.85 Mbp 7 87.59 Mbp
40 239 2.03 Mbp 9 75.60 Mbp
50 373 1.37 Mbp 13 54.08 Mbp
60 598 0.68 Mbp 17 42.65 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.664x 1275 1.46 Gbp 335 1.46 Gbp
NG based on genome size 2.20 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 11 June 2024
rPodTil1.hap2.asm.20240611.fasta.gz (363.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 32 5.39 Mbp 2 122.17 Mbp
20 83 3.68 Mbp 4 102.78 Mbp
30 153 2.71 Mbp 6 96.66 Mbp
40 250 1.87 Mbp 9 70.25 Mbp
50 401 1.14 Mbp 12 55.10 Mbp
60 700 419.51 Kbp 17 40.48 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.636x 1331 1.40 Gbp 395 1.40 Gbp
NG based on genome size 2.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 11 June 2024
rPodTil1.MT.20240611.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.