Polycarpa mamillaris

(A sea squirt)

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: kaPolMami
  name: Polycarpa mamillaris
  taxon_id: 2170621
  common_name: (A sea squirt)
  order:
    name: Stolidobranchia
  family:
    name: Styelidae
  individuals:
    - short_name: kaPolMami1
      biosample_id: SAMEA112789121
      sex:
  genome_size: 723720000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) kaPolMami1 47.21 Gbp 65.23x 20.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.72 Gbp.
Last upload on 27 October 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
kaPolMami1 PacBio HiFi (.bam) 47.21 Gbp 65.23x 20.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.72 Gbp.
Last upload on 27 October 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 7 May 2025
kaPolMami1.hap1.cur.20250507.fasta.gz (184.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 110 0.50 Mbp 1 80.22 Mbp
20 279 370.47 Kbp 3 44.07 Mbp
30 502 286.43 Kbp 5 41.74 Mbp
40 784 232.82 Kbp 6 41.53 Mbp
50 1133 186.00 Kbp 8 39.09 Mbp
60 1575 144.81 Kbp 10 36.96 Mbp
70 2153 107.37 Kbp 12 36.09 Mbp
80 2988 69.38 Kbp 14 29.59 Mbp
90 4454 33.04 Kbp 456 43.87 Kbp
100 0 0
0.961x 6750 0.70 Gbp 2667 0.70 Gbp
NG based on genome size 0.72 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 7 May 2025
kaPolMami1.hap2.cur.20250507.fasta.gz (187.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 115 491.70 Kbp 1 81.54 Mbp
20 288 367.21 Kbp 3 44.73 Mbp
30 509 292.29 Kbp 4 42.82 Mbp
40 778 242.56 Kbp 6 39.78 Mbp
50 1111 196.84 Kbp 8 39.40 Mbp
60 1526 156.27 Kbp 10 34.92 Mbp
70 2053 120.46 Kbp 12 33.39 Mbp
80 2760 85.61 Kbp 14 31.83 Mbp
90 3888 45.19 Kbp 246 94.58 Kbp
100 0 0
0.952x 5388 0.69 Gbp 1458 0.69 Gbp
NG based on genome size 0.72 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.