Poromitra crassiceps

crested bigscale

Included in the VGP.


metadata.yaml (view) (edit on github)
public domain, Emma Kissling (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fPorCra3 67.95 Gbp N/A 115.9 GiB
Arima fPorCra3 132.02 Gbp N/A 60.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPorCra3 PacBio HiFi (.bam) 67.95 Gbp N/A 115.9 GiB
Arima 132.02 Gbp N/A 60.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 August 2023.
Assemblies
Individual 3 Haplotype 1 Assembly
Version assembly_curated from 10 December 2024
fPorCra3.hap1.cur.20241210.fasta.gz (424.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 51 2.45 Mbp 2 123.09 Mbp
20 130 1.79 Mbp 3 96.76 Mbp
30 233 1.38 Mbp 5 66.70 Mbp
40 365 1.09 Mbp 8 59.98 Mbp
50 534 0.84 Mbp 11 53.86 Mbp
60 753 0.65 Mbp 14 45.88 Mbp
70 1046 477.28 Kbp 18 32.40 Mbp
80 1465 312.32 Kbp 24 22.78 Mbp
90 2199 151.25 Kbp 52 0.85 Mbp
100 5763 1.00 Kbp 2788 1.00 Kbp
1.000x 5763 1.63 Gbp 2788 1.63 Gbp
NG based on genome size .
Individual 3 Haplotype 2 Assembly
Version assembly_curated from 10 December 2024
fPorCra3.hap2.cur.20241210.fasta.gz (399.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 44 2.68 Mbp 2 120.67 Mbp
20 113 1.88 Mbp 3 99.38 Mbp
30 205 1.45 Mbp 5 64.84 Mbp
40 324 1.11 Mbp 7 58.87 Mbp
50 479 0.86 Mbp 10 53.34 Mbp
60 679 0.66 Mbp 13 42.81 Mbp
70 945 490.47 Kbp 17 34.80 Mbp
80 1307 343.91 Kbp 22 25.18 Mbp
90 1882 193.09 Kbp 30 17.42 Mbp
100 4301 1.00 Kbp 1407 1.00 Kbp
1.000x 4301 1.51 Gbp 1407 1.51 Gbp
NG based on genome size .
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 April 2024
fPorCra3.MT.20240405.fasta.gz (5.5 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.