Poromitra crassiceps
crested bigscale
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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public domain, Emma Kissling (wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | fPorCra3 | 67.95 Gbp | N/A | 115.9 GiB | |
Arima | fPorCra3 | 132.02 Gbp | N/A | 60.7 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 August 2023.
Coverage based on genome size .
Last upload on 8 August 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fPorCra3 | PacBio HiFi (.bam) | 67.95 Gbp | N/A | 115.9 GiB | |
Arima | 132.02 Gbp | N/A | 60.7 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 August 2023.
Coverage based on genome size .
Last upload on 8 August 2023.
Assemblies
Individual 3 Haplotype 1 Assembly
Version assembly_curated from 10 December 2024
fPorCra3.hap1.cur.20241210.fasta.gz (424.0 MiB)
Quality: not computed
Version assembly_curated from 10 December 2024
fPorCra3.hap1.cur.20241210.fasta.gz (424.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 51 | 2.45 Mbp | 2 | 123.09 Mbp |
20 | 130 | 1.79 Mbp | 3 | 96.76 Mbp |
30 | 233 | 1.38 Mbp | 5 | 66.70 Mbp |
40 | 365 | 1.09 Mbp | 8 | 59.98 Mbp |
50 | 534 | 0.84 Mbp | 11 | 53.86 Mbp |
60 | 753 | 0.65 Mbp | 14 | 45.88 Mbp |
70 | 1046 | 477.28 Kbp | 18 | 32.40 Mbp |
80 | 1465 | 312.32 Kbp | 24 | 22.78 Mbp |
90 | 2199 | 151.25 Kbp | 52 | 0.85 Mbp |
100 | 5763 | 1.00 Kbp | 2788 | 1.00 Kbp |
1.000x | 5763 | 1.63 Gbp | 2788 | 1.63 Gbp |
NG based on genome size .
Individual 3 Haplotype 2 Assembly
Version assembly_curated from 10 December 2024
fPorCra3.hap2.cur.20241210.fasta.gz (399.6 MiB)
Quality: not computed
Version assembly_curated from 10 December 2024
fPorCra3.hap2.cur.20241210.fasta.gz (399.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 44 | 2.68 Mbp | 2 | 120.67 Mbp |
20 | 113 | 1.88 Mbp | 3 | 99.38 Mbp |
30 | 205 | 1.45 Mbp | 5 | 64.84 Mbp |
40 | 324 | 1.11 Mbp | 7 | 58.87 Mbp |
50 | 479 | 0.86 Mbp | 10 | 53.34 Mbp |
60 | 679 | 0.66 Mbp | 13 | 42.81 Mbp |
70 | 945 | 490.47 Kbp | 17 | 34.80 Mbp |
80 | 1307 | 343.91 Kbp | 22 | 25.18 Mbp |
90 | 1882 | 193.09 Kbp | 30 | 17.42 Mbp |
100 | 4301 | 1.00 Kbp | 1407 | 1.00 Kbp |
1.000x | 4301 | 1.51 Gbp | 1407 | 1.51 Gbp |
NG based on genome size .
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 April 2024
fPorCra3.MT.20240405.fasta.gz (5.5 KiB)
Quality: not computed
Version assembly_MT_cambridge from 5 April 2024
fPorCra3.MT.20240405.fasta.gz (5.5 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.