Protomyctophum bolini

Bolin's lanternfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fProBol
  name: Protomyctophum bolini
  taxon_id: 443714
  common_name: Bolin's lanternfish
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fProBol1
      biosample_id: SAMEA12815434
      sex: male
  genome_size: 1907100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fProBol1 35.11 Gbp 18.41x 97.1 GiB
Arima fProBol1 257.77 Gbp 135.17x 79.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 1 September 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fProBol1 PacBio HiFi (.bam) 35.11 Gbp 18.41x 97.1 GiB
Arima 257.77 Gbp 135.17x 79.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 1 September 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 January 2024
fProBol1.pri.cur.20240126.fasta.gz (294.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 49 2.92 Mbp 4 52.59 Mbp
20 129 1.91 Mbp 8 50.26 Mbp
30 253 1.27 Mbp 12 45.97 Mbp
40 446 0.77 Mbp 16 44.21 Mbp
50 799 365.54 Kbp 21 37.95 Mbp
60 2444 23.94 Kbp 652 27.98 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.602x 2736 1.15 Gbp 951 1.15 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 January 2024
fProBol1.alt.cur.20240126.fasta.gz (348.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 168 0.81 Mbp 168 0.81 Mbp
20 478 477.61 Kbp 478 477.61 Kbp
30 991 295.87 Kbp 991 295.87 Kbp
40 1830 176.14 Kbp 1830 176.14 Kbp
50 3423 80.51 Kbp 3423 80.51 Kbp
60 7460 31.78 Kbp 7460 31.78 Kbp
70 16028 12.17 Kbp 16028 12.17 Kbp
80 0 0
90 0 0
100 0 0
0.703x 16600 1.34 Gbp 16600 1.34 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 1 September 2023
fProBol1.MT.20230901.fasta.gz (5.8 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.