Raja montagui

spotted ray

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: sRajMon
  name: Raja montagui
  taxon_id: 27588
  common_name: spotted ray
  order:
    name: Rajiformes
  family:
    name: Rajidae
  individuals:
    - short_name: sRajMon1
      biosample_id: SAMEA114298640
      sex:
  genome_size: 3374100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) sRajMon1 83.99 Gbp 24.89x 32.4 GiB
Arima sRajMon1 305.39 Gbp 90.51x 87.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.37 Gbp.
Last upload on 7 July 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
sRajMon1 PacBio HiFi (.bam) 83.99 Gbp 24.89x 32.4 GiB
Arima 305.39 Gbp 90.51x 87.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.37 Gbp.
Last upload on 7 July 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 14 February 2026
sRajMon1.hap1.cur.20260214.fasta.gz (791.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 71 3.74 Mbp 3 133.58 Mbp
20 182 2.58 Mbp 5 117.15 Mbp
30 342 1.75 Mbp 9 81.56 Mbp
40 569 1.25 Mbp 13 67.39 Mbp
50 894 0.87 Mbp 19 47.49 Mbp
60 1381 0.55 Mbp 27 39.62 Mbp
70 2268 258.00 Kbp 38 19.89 Mbp
80 5133 48.98 Kbp 2091 49.35 Kbp
90 0 0
100 0 0
0.818x 7572 2.76 Gbp 4542 2.76 Gbp
NG based on genome size 3.37 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 14 February 2026
sRajMon1.hap2.cur.20260214.fasta.gz (793.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 70 3.63 Mbp 3 133.74 Mbp
20 184 2.45 Mbp 5 113.15 Mbp
30 349 1.75 Mbp 9 80.38 Mbp
40 577 1.26 Mbp 14 66.26 Mbp
50 898 0.88 Mbp 20 46.66 Mbp
60 1381 0.56 Mbp 28 36.84 Mbp
70 2209 285.16 Kbp 42 14.35 Mbp
80 4629 61.68 Kbp 1747 61.88 Kbp
90 0 0
100 0 0
0.821x 6791 2.77 Gbp 3918 2.77 Gbp
NG based on genome size 3.37 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 July 2024
sRajMon1.MT.20240708.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.