Somateria mollissima

common eider

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bSomMol
  name: Somateria mollissima
  taxon_id: 76058
  common_name: common eider
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bSomMol2
      biosample_id: SAMEA113398850
      sex: female
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bSomMol2 63.13 Gbp 45.78x 18.6 GiB
Arima bSomMol2 72.80 Gbp 52.79x 20.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bSomMol2 PacBio HiFi (.bam) 63.13 Gbp 45.78x 18.6 GiB
Arima 72.80 Gbp 52.79x 20.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 8 March 2024
bSomMol2.hap1.asm.20240308.fasta.gz (308.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 8.01 Mbp 1 206.94 Mbp
20 36 5.66 Mbp 2 158.89 Mbp
30 63 4.56 Mbp 3 119.33 Mbp
40 98 3.45 Mbp 4 77.30 Mbp
50 143 2.71 Mbp 6 65.01 Mbp
60 202 1.99 Mbp 10 29.11 Mbp
70 284 1.39 Mbp 16 19.37 Mbp
80 421 0.73 Mbp 28 6.02 Mbp
90 0 0
100 0 0
0.897x 1315 1.24 Gbp 676 1.24 Gbp
NG based on genome size 1.38 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 8 March 2024
bSomMol2.hap2.asm.20240308.fasta.gz (292.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 8.19 Mbp 1 207.45 Mbp
20 34 6.01 Mbp 2 159.05 Mbp
30 59 4.76 Mbp 3 118.80 Mbp
40 93 3.65 Mbp 4 77.71 Mbp
50 136 2.71 Mbp 7 38.61 Mbp
60 199 1.81 Mbp 12 23.07 Mbp
70 295 1.10 Mbp 19 13.58 Mbp
80 488 386.17 Kbp 48 1.18 Mbp
90 0 0
100 0 0
0.837x 977 1.15 Gbp 413 1.15 Gbp
NG based on genome size 1.38 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 8 March 2024
bSomMol2.MT.20240308.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.