Spirinchus thaleichthys

longfin smelt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  name: Spirinchus thaleichthys
  individuals:
  - short_name: fSpiTha1
  short_name: fSpiTha
  taxon_id: 260508
  common_name: longfin smelt
  genome_size: 822000000
  genome_size_method: GoAT
  order:
    name: Osmeriformes
  family:
    name: Osmeridae
  project: [ vgp ]
CC BY 2.0 U.S. Bureau of Reclamation from U.S. FWS Pacific Southwest Region (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) fSpiTha1 170.47 Gbp 207.39x 381.9 GiB
PacBio HiFi (.fq) fSpiTha1 36.39 Gbp 44.27x 26.9 GiB
PacBio HiFi (.bam) fSpiTha1 36.50 Gbp 44.41x 124.0 GiB
Arima fSpiTha1 77.63 Gbp 94.44x 37.8 GiB
Illumina fSpiTha1 44.66 Gbp 54.33x 21.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.82 Gbp.
Last upload on 17 June 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSpiTha1 PacBio HiFi (subreads) 170.47 Gbp 207.39x 381.9 GiB
PacBio HiFi (.fq) 36.39 Gbp 44.27x 26.9 GiB
PacBio HiFi (.bam) 36.50 Gbp 44.41x 124.0 GiB
Arima 77.63 Gbp 94.44x 37.8 GiB
Illumina 44.66 Gbp 54.33x 21.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.82 Gbp.
Last upload on 17 June 2024.
Assemblies

No assemblies.

Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.