Sturnus vulgaris

Common starling

Included in the VGP.


metadata.yaml (view) (edit on github)
CC0 1.0 Bernard Spragg (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bStuVul1 49.38 Gbp 38.55x 37.5 GiB
Arima bStuVul1 64.33 Gbp 50.22x 33.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.28 Gbp.
Last upload on 18 July 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bStuVul1 PacBio HiFi (.fq) 49.38 Gbp 38.55x 37.5 GiB
Arima 64.33 Gbp 50.22x 33.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.28 Gbp.
Last upload on 18 July 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 22 April 2024
bStuVul1.HiC.hap1.20240422.fasta.gz (348.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 44.30 Mbp 1 133.09 Mbp
20 6 32.31 Mbp 3 107.28 Mbp
30 10 26.81 Mbp 4 74.62 Mbp
40 16 21.82 Mbp 6 52.43 Mbp
50 23 17.39 Mbp 8 48.47 Mbp
60 31 11.31 Mbp 11 31.33 Mbp
70 47 7.05 Mbp 16 21.82 Mbp
80 73 3.45 Mbp 24 14.63 Mbp
90 140 1.01 Mbp 36 7.30 Mbp
100 701 73.05 Kbp 148 284.87 Kbp
1.021x 1270 1.31 Gbp 1032 1.36 Gbp
NG based on genome size 1.28 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 22 April 2024
bStuVul1.HiC.hap2.20240422.fasta.gz (300.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 45.20 Mbp 1 157.95 Mbp
20 6 30.75 Mbp 2 117.05 Mbp
30 11 22.09 Mbp 3 114.32 Mbp
40 17 18.76 Mbp 5 74.17 Mbp
50 26 11.98 Mbp 8 32.22 Mbp
60 39 8.10 Mbp 13 20.87 Mbp
70 59 4.37 Mbp 20 13.77 Mbp
80 124 0.74 Mbp 36 3.75 Mbp
90 0 0
100 0 0
0.856x 562 1.10 Gbp 381 1.10 Gbp
NG based on genome size 1.28 Gbp.
Assembly Metadata
assembly_vgp_HiC_2.0/bStuVul1.yml (view)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.