Tadorna tadorna

common shelduck

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bTadTad
  name: Tadorna tadorna
  taxon_id: 75865
  common_name: common shelduck
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bTadTad1
      biosample_id: SAMEA113398967
      sex: male
  genome_size: 1364310000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bTadTad1 43.75 Gbp 32.07x 12.5 GiB
Arima bTadTad1 78.26 Gbp 57.37x 21.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 29 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bTadTad1 PacBio HiFi (.bam) 43.75 Gbp 32.07x 12.5 GiB
Arima 78.26 Gbp 57.37x 21.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 29 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 29 March 2024
bTadTad1.hap1.asm.20240329.fasta.gz (310.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 14 8.37 Mbp 1 208.02 Mbp
20 33 6.02 Mbp 2 160.23 Mbp
30 60 4.44 Mbp 3 120.94 Mbp
40 95 3.58 Mbp 4 85.56 Mbp
50 137 2.81 Mbp 6 65.68 Mbp
60 195 1.96 Mbp 9 32.69 Mbp
70 277 1.36 Mbp 15 20.24 Mbp
80 420 0.64 Mbp 26 6.94 Mbp
90 0 0
100 0 0
0.891x 1684 1.22 Gbp 1110 1.22 Gbp
NG based on genome size 1.36 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 29 March 2024
bTadTad1.hap2.asm.20240329.fasta.gz (305.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 15 7.96 Mbp 1 207.04 Mbp
20 35 6.16 Mbp 2 159.00 Mbp
30 61 4.69 Mbp 3 120.39 Mbp
40 94 3.59 Mbp 4 84.83 Mbp
50 137 2.81 Mbp 6 65.43 Mbp
60 195 1.98 Mbp 9 32.62 Mbp
70 282 1.24 Mbp 15 20.67 Mbp
80 444 0.55 Mbp 27 5.96 Mbp
90 0 0
100 0 0
0.874x 1290 1.19 Gbp 724 1.19 Gbp
NG based on genome size 1.36 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 29 March 2024
bTadTad1.MT.20240329.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.