Talpa europaea

European mole

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mTalEur
  name: Talpa europaea
  taxon_id: 9375
  common_name: European mole
  order:
    name: Soricomorpha
  family:
    name: Talpidae
  individuals:
    - short_name: mTalEur1
      biosample_id: SAMEA112468127
      sex: male
  genome_size: 2445000000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mTalEur1 70.46 Gbp 28.82x 28.3 GiB
Arima mTalEur1 481.28 Gbp 196.84x 132.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.45 Gbp.
Last upload on 25 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mTalEur1 PacBio HiFi (.bam) 70.46 Gbp 28.82x 28.3 GiB
Arima 481.28 Gbp 196.84x 132.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.45 Gbp.
Last upload on 25 April 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 22 December 2023
mTalEur1.pri.asm.20231222.fasta.gz (591.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 9.49 Mbp 2 176.39 Mbp
20 51 7.09 Mbp 3 159.14 Mbp
30 92 5.43 Mbp 5 139.49 Mbp
40 141 4.48 Mbp 6 135.83 Mbp
50 204 3.40 Mbp 8 99.53 Mbp
60 286 2.59 Mbp 11 83.39 Mbp
70 406 1.59 Mbp 15 45.97 Mbp
80 632 0.62 Mbp 24 15.29 Mbp
90 0 0
100 0 0
0.836x 1306 2.04 Gbp 357 2.04 Gbp
NG based on genome size 2.45 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 22 December 2023
mTalEur1.alt.asm.20231222.fasta.gz (437.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 544 271.45 Kbp 544 271.45 Kbp
20 1863 137.60 Kbp 1863 137.60 Kbp
30 4220 81.37 Kbp 4220 81.37 Kbp
40 8111 50.20 Kbp 8111 50.20 Kbp
50 14314 31.46 Kbp 14314 31.46 Kbp
60 24175 18.67 Kbp 24175 18.67 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.624x 28388 1.53 Gbp 28388 1.53 Gbp
NG based on genome size 2.45 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 25 April 2024
mTalEur1.hap1.asm.20240425.fasta.gz (537.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 25 8.25 Mbp 2 151.62 Mbp
20 60 5.73 Mbp 4 138.91 Mbp
30 108 4.53 Mbp 5 138.79 Mbp
40 168 3.64 Mbp 7 118.35 Mbp
50 245 2.84 Mbp 10 104.79 Mbp
60 344 2.06 Mbp 12 103.12 Mbp
70 489 1.36 Mbp 14 96.13 Mbp
80 763 496.33 Kbp 18 25.06 Mbp
90 0 0
100 0 0
0.844x 1584 2.06 Gbp 580 2.06 Gbp
NG based on genome size 2.45 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 25 April 2024
mTalEur1.hap2.asm.20240425.fasta.gz (537.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 8.69 Mbp 2 153.09 Mbp
20 59 5.66 Mbp 4 138.73 Mbp
30 107 4.52 Mbp 5 138.65 Mbp
40 167 3.71 Mbp 7 135.07 Mbp
50 242 2.91 Mbp 9 118.19 Mbp
60 339 2.07 Mbp 12 103.96 Mbp
70 484 1.38 Mbp 14 96.07 Mbp
80 751 0.54 Mbp 17 50.89 Mbp
90 0 0
100 0 0
0.845x 1507 2.07 Gbp 510 2.07 Gbp
NG based on genome size 2.45 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 25 April 2024
mTalEur1.MT.20240425.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.