Thunnus thynnus
Atlantic bluefin tuna
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | fThuThy2 | 31.17 Gbp | 39.84x | 11.7 GiB | |
Arima | fThuThy3 | 145.83 Gbp | 186.39x | 43.9 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 15 December 2023.
Coverage based on genome size 0.78 Gbp.
Last upload on 15 December 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fThuThy2 | PacBio HiFi (.bam) | 31.17 Gbp | 39.84x | 11.7 GiB | |
fThuThy3 | Arima | 145.83 Gbp | 186.39x | 43.9 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.78 Gbp.
Last upload on 15 December 2023.
Coverage based on genome size 0.78 Gbp.
Last upload on 15 December 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 26 January 2024
fThuThy2.pri.cur.20240126.fasta.gz (228.7 MiB)
Quality: not computed
Version assembly_curated from 26 January 2024
fThuThy2.pri.cur.20240126.fasta.gz (228.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 11 | 6.72 Mbp | 2 | 40.88 Mbp |
20 | 24 | 5.58 Mbp | 4 | 37.85 Mbp |
30 | 39 | 4.62 Mbp | 7 | 35.69 Mbp |
40 | 57 | 3.79 Mbp | 9 | 35.45 Mbp |
50 | 81 | 2.98 Mbp | 11 | 34.32 Mbp |
60 | 109 | 2.52 Mbp | 13 | 32.23 Mbp |
70 | 144 | 2.03 Mbp | 16 | 31.06 Mbp |
80 | 189 | 1.47 Mbp | 18 | 30.67 Mbp |
90 | 259 | 0.84 Mbp | 21 | 27.78 Mbp |
100 | 413 | 227.62 Kbp | 24 | 20.98 Mbp |
1.021x | 588 | 0.80 Gbp | 120 | 0.80 Gbp |
NG based on genome size 0.78 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 26 January 2024
fThuThy2.alt.cur.20240126.fasta.gz (230.1 MiB)
Quality: not computed
Version assembly_curated from 26 January 2024
fThuThy2.alt.cur.20240126.fasta.gz (230.1 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 32 | 2.05 Mbp | 32 | 2.05 Mbp |
20 | 75 | 1.60 Mbp | 75 | 1.60 Mbp |
30 | 131 | 1.24 Mbp | 131 | 1.24 Mbp |
40 | 202 | 1.01 Mbp | 202 | 1.01 Mbp |
50 | 291 | 0.80 Mbp | 291 | 0.80 Mbp |
60 | 400 | 0.63 Mbp | 400 | 0.63 Mbp |
70 | 544 | 467.19 Kbp | 544 | 467.19 Kbp |
80 | 745 | 325.55 Kbp | 745 | 325.55 Kbp |
90 | 1064 | 182.56 Kbp | 1064 | 182.56 Kbp |
100 | 2079 | 28.97 Kbp | 2077 | 29.03 Kbp |
1.031x | 3715 | 0.81 Gbp | 3713 | 0.81 Gbp |
NG based on genome size 0.78 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.