Triturus cristatus

warty newt

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: aTriCri
  name: Triturus cristatus
  taxon_id: 8323
  common_name: warty newt
  order:
    name: Caudata
  family:
    name: Salamandridae
  individuals:
    - short_name: aTriCri1
      biosample_id: SAMEA112468129
      sex: female
  genome_size: 24327750000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) aTriCri1 768.41 Gbp 31.59x 291.6 GiB
Arima aTriCri1 918.45 Gbp 37.75x 278.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 24.33 Gbp.
Last upload on 25 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aTriCri1 PacBio HiFi (.bam) 768.41 Gbp 31.59x 291.6 GiB
Arima 918.45 Gbp 37.75x 278.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 24.33 Gbp.
Last upload on 25 April 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 2 May 2024
aTriCri1.pri.asm.20240502.fasta.gz (6.2 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 96 20.36 Mbp 1 2.47 Gbp
20 238 14.96 Mbp 2 2.41 Gbp
30 422 11.88 Mbp 4 2.15 Gbp
40 646 9.89 Mbp 5 1.92 Gbp
50 921 7.95 Mbp 6 1.86 Gbp
60 1263 6.38 Mbp 7 1.68 Gbp
70 1696 4.96 Mbp 9 1.26 Gbp
80 2273 3.53 Mbp 11 1.14 Gbp
90 3167 1.97 Mbp 18 100.70 Mbp
100 0 0
0.971x 6447 23.62 Gbp 1532 23.63 Gbp
NG based on genome size 24.33 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 2 May 2024
aTriCri1.alt.asm.20240502.fasta.gz (2.5 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2039 433.05 Kbp 2039 433.05 Kbp
20 23870 69.52 Kbp 23870 69.52 Kbp
30 69361 43.85 Kbp 69361 43.85 Kbp
40 135821 28.99 Kbp 135821 28.99 Kbp
50 0 0
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.438x 179407 10.65 Gbp 179407 10.65 Gbp
NG based on genome size 24.33 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 2 May 2024
aTriCri1.MT.20240502.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.