Vulpes vulpes
red fox
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | mVulVul1 | 66.56 Gbp | 23.88x | 21.6 GiB | |
Arima | mVulVul1 | 324.06 Gbp | 116.26x | 89.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.79 Gbp.
Last upload on 5 April 2024.
Coverage based on genome size 2.79 Gbp.
Last upload on 5 April 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mVulVul1 | PacBio HiFi (.bam) | 66.56 Gbp | 23.88x | 21.6 GiB | |
Arima | 324.06 Gbp | 116.26x | 89.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.79 Gbp.
Last upload on 5 April 2024.
Coverage based on genome size 2.79 Gbp.
Last upload on 5 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 4 April 2024
mVulVul1.hap1.asm.20240404.fasta.gz (629.8 MiB)
Quality: not computed
Version assembly_cambridge from 4 April 2024
mVulVul1.hap1.asm.20240404.fasta.gz (629.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 48 | 4.65 Mbp | 2 | 189.89 Mbp |
20 | 119 | 3.40 Mbp | 3 | 171.86 Mbp |
30 | 213 | 2.67 Mbp | 5 | 151.96 Mbp |
40 | 329 | 2.17 Mbp | 7 | 139.24 Mbp |
50 | 472 | 1.72 Mbp | 9 | 137.19 Mbp |
60 | 654 | 1.34 Mbp | 11 | 120.64 Mbp |
70 | 903 | 0.92 Mbp | 14 | 107.50 Mbp |
80 | 1319 | 461.47 Kbp | 17 | 78.18 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.866x | 2393 | 2.41 Gbp | 575 | 2.41 Gbp |
NG based on genome size 2.79 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 4 April 2024
mVulVul1.hap2.asm.20240404.fasta.gz (626.3 MiB)
Quality: not computed
Version assembly_cambridge from 4 April 2024
mVulVul1.hap2.asm.20240404.fasta.gz (626.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 49 | 4.50 Mbp | 2 | 189.36 Mbp |
20 | 122 | 3.32 Mbp | 4 | 158.97 Mbp |
30 | 216 | 2.67 Mbp | 5 | 151.74 Mbp |
40 | 332 | 2.17 Mbp | 7 | 138.08 Mbp |
50 | 475 | 1.74 Mbp | 9 | 129.76 Mbp |
60 | 659 | 1.33 Mbp | 12 | 121.58 Mbp |
70 | 907 | 0.94 Mbp | 14 | 110.02 Mbp |
80 | 1313 | 460.43 Kbp | 17 | 102.02 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.861x | 2186 | 2.40 Gbp | 389 | 2.40 Gbp |
NG based on genome size 2.79 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 April 2024
mVulVul1.MT.20240404.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_cambridge from 4 April 2024
mVulVul1.MT.20240404.fasta.gz (5.0 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.