Acanthisitta chloris
rifleman
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | bAcaChl1: GCA_016904835.1 | bAcaChl1: GCA_016880875.1 |
ENA | bAcaChl1: GCA_016904835.1 | bAcaChl1: GCA_016880875.1 |
UCSC Genome Browser | bAcaChl1: GCA_016904835.1 | bAcaChl1: GCA_016880875.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 2.0 digitaltrails (flickr)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.05 Gbp.
Last upload on 17 September 2019.
Coverage based on genome size 1.05 Gbp.
Last upload on 17 September 2019.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bAcaChl1 | PacBio CLR | 68.95 Gbp | 65.67x | 118.5 GiB | |
10x | 78.23 Gbp | 74.50x | 36.4 GiB | ||
Bionano | N/A | 592.44x | 639.9 MiB | ||
bAcaChl4 | Arima | 94.23 Gbp | 89.74x | 56.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.05 Gbp.
Last upload on 17 September 2019.
Coverage based on genome size 1.05 Gbp.
Last upload on 17 September 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 May 2021
bAcaChl1.pri.cur.20210526.fasta.gz (311.4 MiB)
Quality: 240.7 errors/Mb (QV=36.19)
Version assembly_curated from 26 May 2021
bAcaChl1.pri.cur.20210526.fasta.gz (311.4 MiB)
Quality: 240.7 errors/Mb (QV=36.19)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 57.89 Mbp | 0 | 136.57 Mbp |
20 | 3 | 40.40 Mbp | 1 | 96.25 Mbp |
30 | 6 | 36.90 Mbp | 3 | 62.81 Mbp |
40 | 10 | 24.09 Mbp | 4 | 51.96 Mbp |
50 | 15 | 16.73 Mbp | 7 | 40.83 Mbp |
60 | 22 | 13.37 Mbp | 9 | 34.43 Mbp |
70 | 31 | 9.52 Mbp | 13 | 24.09 Mbp |
80 | 44 | 5.94 Mbp | 18 | 20.30 Mbp |
90 | 68 | 2.84 Mbp | 24 | 15.24 Mbp |
100 | 141 | 469.88 Kbp | 35 | 5.17 Mbp |
1.022x | 400 | 1.07 Gbp | 205 | 1.08 Gbp |
NG based on genome size 1.05 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 May 2021
bAcaChl1.alt.cur.20210526.fasta.gz (240.5 MiB)
Quality: not computed
Version assembly_curated from 26 May 2021
bAcaChl1.alt.cur.20210526.fasta.gz (240.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 13 | 5.84 Mbp | 13 | 5.84 Mbp |
20 | 37 | 3.67 Mbp | 37 | 3.67 Mbp |
30 | 74 | 2.37 Mbp | 74 | 2.37 Mbp |
40 | 126 | 1.72 Mbp | 126 | 1.72 Mbp |
50 | 200 | 1.18 Mbp | 200 | 1.18 Mbp |
60 | 314 | 0.66 Mbp | 314 | 0.66 Mbp |
70 | 746 | 91.73 Kbp | 746 | 92.01 Kbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.788x | 2899 | 0.83 Gbp | 2879 | 0.83 Gbp |
NG based on genome size 1.05 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
bAcaChl1.MT.20191004.fasta.gz (5.2 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 4 October 2019
bAcaChl1.MT.20191004.fasta.gz (5.2 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.