Accipiter gentilis
northern goshawk
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | bAccGen1: GCA_929443795.2 | bAccGen1: GCA_929447715.1 |
ENA | bAccGen1: GCA_929443795.2 | bAccGen1: GCA_929447715.1 |
UCSC Genome Browser | bAccGen1: GCA_929443795.2 | bAccGen1: GCA_929447715.1 |
metadata.yaml (view) (edit on github) |
---|
CC BY-SA 2.0, Steve Garvie (wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | bAccGen1 | 50.34 Gbp | 36.01x | 78.3 GiB | |
10x | bAccGen1 | 83.17 Gbp | 59.49x | 40.1 GiB | |
Arima | bAccGen1 | 68.59 Gbp | 49.06x | 31.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 1.40 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bAccGen1 | PacBio HiFi (.bam) | 50.34 Gbp | 36.01x | 78.3 GiB | |
10x | 83.17 Gbp | 59.49x | 40.1 GiB | ||
Arima | 68.59 Gbp | 49.06x | 31.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.40 Gbp.
Last upload on 3 May 2022.
Coverage based on genome size 1.40 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 4 February 2022
bAccGen1.pri.cur.20220204.fasta.gz (382.5 MiB)
Quality: 12.3 errors/Mb (QV=49.11)
Version assembly_curated from 4 February 2022
bAccGen1.pri.cur.20220204.fasta.gz (382.5 MiB)
Quality: 12.3 errors/Mb (QV=49.11)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 37.31 Mbp | 1 | 55.81 Mbp |
20 | 7 | 29.00 Mbp | 4 | 48.36 Mbp |
30 | 12 | 24.90 Mbp | 7 | 44.90 Mbp |
40 | 19 | 20.60 Mbp | 10 | 41.28 Mbp |
50 | 26 | 17.71 Mbp | 14 | 35.03 Mbp |
60 | 35 | 12.27 Mbp | 18 | 31.04 Mbp |
70 | 49 | 8.94 Mbp | 23 | 27.20 Mbp |
80 | 68 | 5.74 Mbp | 29 | 21.93 Mbp |
90 | 109 | 2.01 Mbp | 36 | 10.40 Mbp |
100 | 637 | 1.00 Kbp | 454 | 1.00 Kbp |
1.000x | 638 | 1.40 Gbp | 455 | 1.40 Gbp |
NG based on genome size 1.40 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 4 February 2022
bAccGen1.alt.cur.20220204.fasta.gz (311.2 MiB)
Quality: not computed
Version assembly_curated from 4 February 2022
bAccGen1.alt.cur.20220204.fasta.gz (311.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 33 | 2.20 Mbp | 33 | 2.20 Mbp |
20 | 96 | 1.54 Mbp | 96 | 1.54 Mbp |
30 | 179 | 1.18 Mbp | 179 | 1.18 Mbp |
40 | 288 | 0.89 Mbp | 288 | 0.89 Mbp |
50 | 429 | 0.70 Mbp | 429 | 0.70 Mbp |
60 | 611 | 0.53 Mbp | 611 | 0.53 Mbp |
70 | 856 | 384.68 Kbp | 856 | 385.03 Kbp |
80 | 1221 | 239.81 Kbp | 1220 | 239.94 Kbp |
90 | 1901 | 107.53 Kbp | 1900 | 107.65 Kbp |
100 | 4485 | 3.98 Kbp | 4483 | 3.98 Kbp |
1.000x | 4486 | 1.11 Gbp | 4484 | 1.11 Gbp |
NG based on genome size 1.40 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.