Aegithalos caudatus

Northern long-tailed tit

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAegCau
  name: Aegithalos caudatus
  taxon_id: 73327
  common_name: Northern long-tailed tit
  order:
    name: Passeriformes
  family:
    name: Aegithalidae
  individuals:
    - short_name: bAegCau2
      biosample_id: SAMEA114464538
      sex:
  genome_size: 1281180000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAegCau2 24.01 Gbp 18.74x 7.7 GiB
Arima bAegCau2 50.74 Gbp 39.61x 14.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.28 Gbp.
Last upload on 16 October 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAegCau2 PacBio HiFi (.bam) 24.01 Gbp 18.74x 7.7 GiB
Arima 50.74 Gbp 39.61x 14.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.28 Gbp.
Last upload on 16 October 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 19 November 2025
bAegCau2.hap1.cur.20251119.fasta.gz (324.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 31.14 Mbp 1 159.79 Mbp
20 9 20.51 Mbp 2 117.75 Mbp
30 16 15.53 Mbp 3 114.01 Mbp
40 26 11.49 Mbp 5 76.72 Mbp
50 40 8.14 Mbp 7 63.31 Mbp
60 61 4.99 Mbp 10 31.14 Mbp
70 97 2.40 Mbp 15 19.17 Mbp
80 186 0.95 Mbp 26 6.26 Mbp
90 467 184.71 Kbp 181 269.81 Kbp
100 0 0
0.950x 1759 1.22 Gbp 1323 1.22 Gbp
NG based on genome size 1.28 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 19 November 2025
bAegCau2.hap2.cur.20251119.fasta.gz (316.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 24.51 Mbp 1 159.17 Mbp
20 11 17.83 Mbp 2 117.36 Mbp
30 20 11.92 Mbp 3 114.48 Mbp
40 32 9.30 Mbp 5 74.05 Mbp
50 47 7.63 Mbp 7 63.19 Mbp
60 68 4.77 Mbp 10 31.33 Mbp
70 106 2.42 Mbp 15 18.90 Mbp
80 200 0.73 Mbp 26 6.32 Mbp
90 1566 22.46 Kbp 1182 22.71 Kbp
100 0 0
0.904x 1856 1.16 Gbp 1473 1.16 Gbp
NG based on genome size 1.28 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.