Alca torda

razorbill

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bAlcTor1: GCA_008658365.1 bAlcTor1: GCA_008658355.1
ENA bAlcTor1: GCA_008658365.1 bAlcTor1: GCA_008658355.1
UCSC Genome Browser bAlcTor1: GCA_008658365.1 bAlcTor1: GCA_008658355.1

metadata.yaml (view) (edit on github)
species:
  common_name: razorbill
  family:
    name: Alcidae
  genome_size: 1200000000
  genome_size_method: null
  individuals:
  - short_name: bAlcTor1
  name: Alca torda
  order:
    name: Charadriiformes
  short_name: bAlcTor
  taxon_id: 28689
  project: [ vgp ]
CC BY 2.0 Paul Wordingham (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bAlcTor1 77.65 Gbp 64.71x 134.2 GiB
10x bAlcTor1 79.24 Gbp 66.03x 37.9 GiB
Bionano bAlcTor1 N/A 295.25x 652.3 MiB
Arima bAlcTor1 105.11 Gbp 87.59x 53.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 19 December 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAlcTor1 PacBio CLR 77.65 Gbp 64.71x 134.2 GiB
10x 79.24 Gbp 66.03x 37.9 GiB
Bionano N/A 295.25x 652.3 MiB
Arima 105.11 Gbp 87.59x 53.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 19 December 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 13 June 2019
bAlcTor1.pri.cur.20190613.fasta.gz (345.1 MiB)

Quality: 176.7 errors/Mb (QV=37.53)

Contigs Scaffolds
NG LG Len LG Len
10 3 33.33 Mbp 0 215.87 Mbp
20 6 31.92 Mbp 1 165.05 Mbp
30 11 23.53 Mbp 1 165.05 Mbp
40 16 21.62 Mbp 2 125.51 Mbp
50 22 18.22 Mbp 4 82.44 Mbp
60 30 15.65 Mbp 5 70.99 Mbp
70 39 9.53 Mbp 7 47.75 Mbp
80 56 5.80 Mbp 10 41.49 Mbp
90 85 2.85 Mbp 13 34.32 Mbp
100 0 0
0.979x 321 1.17 Gbp 94 1.18 Gbp
NG based on genome size 1.20 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 18 June 2019
bAlcTor1.alt.cur.20190618.fasta.gz (362.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 4.92 Mbp 20 4.92 Mbp
20 48 3.68 Mbp 48 3.68 Mbp
30 84 2.99 Mbp 84 2.99 Mbp
40 128 2.50 Mbp 128 2.50 Mbp
50 181 2.00 Mbp 181 2.00 Mbp
60 250 1.52 Mbp 250 1.52 Mbp
70 342 1.13 Mbp 342 1.13 Mbp
80 475 0.74 Mbp 475 0.74 Mbp
90 709 326.68 Kbp 709 326.68 Kbp
100 2334 31.15 Kbp 2334 31.15 Kbp
1.017x 3309 1.22 Gbp 3309 1.22 Gbp
NG based on genome size 1.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
bAlcTor1.MT.20190820.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.